Protein–RNA interactions for Protein: Q8IWZ4

TRIM48, Tripartite motif-containing protein 48, humanhuman

Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48Q8IWZ4 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.02■□□□□ 0.16
TRIM48Q8IWZ4 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.02■□□□□ 0.16
TRIM48Q8IWZ4 AC015911.4-201ENST00000588022 1070 ntBASIC16.02■□□□□ 0.16
TRIM48Q8IWZ4 SPTSSB-204ENST00000617024 1292 ntBASIC16.02■□□□□ 0.16
TRIM48Q8IWZ4 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM48Q8IWZ4 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM48Q8IWZ4 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM48Q8IWZ4 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM48Q8IWZ4 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM48Q8IWZ4 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM48Q8IWZ4 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM48Q8IWZ4 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.02■□□□□ 0.15
TRIM48Q8IWZ4 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 MIR770-201ENST00000390219 98 ntBASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 AC107890.1-201ENST00000422478 521 ntBASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 HMGN1P19-201ENST00000436976 333 ntBASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 RARRES2P9-201ENST00000565168 469 ntBASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 AC011467.4-201ENST00000594891 528 ntBASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 AC003101.2-201ENST00000612557 442 ntBASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 PCDHB19P-201ENST00000570871 2371 ntBASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM48Q8IWZ4 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 AC008677.1-201ENST00000519230 1561 ntBASIC16■□□□□ 0.15
TRIM48Q8IWZ4 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 PCGF3-213ENST00000620529 1899 ntBASIC16■□□□□ 0.15
TRIM48Q8IWZ4 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 BAD-202ENST00000394531 631 ntTSL 3 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 AC098859.1-201ENST00000502915 1238 ntBASIC16■□□□□ 0.15
TRIM48Q8IWZ4 RNA5SP410-201ENST00000516285 106 ntBASIC16■□□□□ 0.15
TRIM48Q8IWZ4 BAD-207ENST00000544785 525 ntTSL 3 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16■□□□□ 0.15
TRIM48Q8IWZ4 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms