Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 AC015922.1-201ENST00000421102 1152 ntBASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 AC135586.1-201ENST00000539323 574 ntBASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 AL662844.4-201ENST00000606367 2838 ntBASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 BTBD7P1-201ENST00000447253 1453 ntBASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC60Q8IWA6 PRORSD1P-202ENST00000563365 2154 ntBASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 AC104794.3-201ENST00000566840 1248 ntBASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC60Q8IWA6 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 CRB3P1-201ENST00000449338 276 ntBASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 AC190387.1-201ENST00000551683 408 ntBASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 MIR6069-201ENST00000620069 79 ntBASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 AL109936.8-201ENST00000641772 604 ntBASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 AC006449.6-201ENST00000612330 2296 ntBASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms