Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 IGHV3OR16-16-201ENST00000563644 343 ntBASIC15.67■□□□□ 0.1
COL28A1Q2UY09 RARRES2P9-201ENST00000565168 469 ntBASIC15.67■□□□□ 0.1
COL28A1Q2UY09 MIR6869-201ENST00000619434 62 ntBASIC15.67■□□□□ 0.1
COL28A1Q2UY09 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 AC007431.3-201ENST00000623221 587 ntBASIC15.67■□□□□ 0.1
COL28A1Q2UY09 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.66■□□□□ 0.1
COL28A1Q2UY09 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 AL844908.2-201ENST00000609461 460 ntBASIC15.66■□□□□ 0.1
COL28A1Q2UY09 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL28A1Q2UY09 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 AC012569.1-201ENST00000591191 1524 ntBASIC15.65■□□□□ 0.1
COL28A1Q2UY09 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 TMEM14DP-201ENST00000422205 345 ntBASIC15.65■□□□□ 0.1
COL28A1Q2UY09 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 TEX28P1-201ENST00000613479 1221 ntBASIC15.65■□□□□ 0.1
COL28A1Q2UY09 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 TEX28P2-201ENST00000617764 1221 ntBASIC15.65■□□□□ 0.1
COL28A1Q2UY09 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.65■□□□□ 0.1
COL28A1Q2UY09 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms