Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.06■□□□□ 0
RNF4P78317 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.06■□□□□ 0
RNF4P78317 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
RNF4P78317 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
RNF4P78317 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.06■□□□□ 0
RNF4P78317 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
RNF4P78317 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.06■□□□□ 0
RNF4P78317 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.06■□□□□ 0
RNF4P78317 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
RNF4P78317 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.06■□□□□ 0
RNF4P78317 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.06■□□□□ 0
RNF4P78317 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.06■□□□□ 0
RNF4P78317 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.06■□□□□ 0
RNF4P78317 AC140878.1-201ENST00000565277 250 ntBASIC15.06■□□□□ 0
RNF4P78317 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.06■□□□□ 0
RNF4P78317 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.06■□□□□ 0
RNF4P78317 MIR4321-201ENST00000592276 80 ntBASIC15.06■□□□□ 0
RNF4P78317 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
RNF4P78317 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.06■□□□□ 0
RNF4P78317 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.06■□□□□ 0
RNF4P78317 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.06■□□□□ 0
RNF4P78317 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.06■□□□□ 0
RNF4P78317 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
RNF4P78317 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.06■□□□□ 0
RNF4P78317 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
RNF4P78317 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.06■□□□□ 0
RNF4P78317 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
RNF4P78317 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
RNF4P78317 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.06■□□□□ 0
RNF4P78317 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.06■□□□□ 0
RNF4P78317 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RNF4P78317 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.05■□□□□ 0
RNF4P78317 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
RNF4P78317 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.05■□□□□ 0
RNF4P78317 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
RNF4P78317 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
RNF4P78317 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
RNF4P78317 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.05■□□□□ -0
RNF4P78317 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RNF4P78317 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
RNF4P78317 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.05■□□□□ -0
RNF4P78317 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.05■□□□□ -0
RNF4P78317 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.05■□□□□ -0
RNF4P78317 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.05■□□□□ -0
RNF4P78317 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.05■□□□□ -0
RNF4P78317 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.05■□□□□ -0
RNF4P78317 DUX4L27-201ENST00000554796 1261 ntBASIC15.05■□□□□ -0
RNF4P78317 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.05■□□□□ -0
RNF4P78317 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
RNF4P78317 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.05■□□□□ -0
RNF4P78317 AL035456.1-201ENST00000456064 1369 ntBASIC15.05■□□□□ -0
RNF4P78317 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.05■□□□□ -0
RNF4P78317 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.05■□□□□ -0
RNF4P78317 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
RNF4P78317 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RNF4P78317 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.05■□□□□ -0
RNF4P78317 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.05■□□□□ -0
RNF4P78317 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.05■□□□□ -0
RNF4P78317 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.05■□□□□ -0
RNF4P78317 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.05■□□□□ -0
RNF4P78317 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.05■□□□□ -0
RNF4P78317 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
RNF4P78317 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
RNF4P78317 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
RNF4P78317 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
RNF4P78317 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.04■□□□□ -0
RNF4P78317 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.04■□□□□ -0
RNF4P78317 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.04■□□□□ -0
RNF4P78317 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
RNF4P78317 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.04■□□□□ -0
RNF4P78317 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms