Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
HDAC4P56524 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HDAC4P56524 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.02■□□□□ 0.32
HDAC4P56524 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.02■□□□□ 0.32
HDAC4P56524 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HDAC4P56524 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HDAC4P56524 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
HDAC4P56524 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HDAC4P56524 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
HDAC4P56524 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HDAC4P56524 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
HDAC4P56524 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.02■□□□□ 0.32
HDAC4P56524 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.02■□□□□ 0.32
HDAC4P56524 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HDAC4P56524 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.02■□□□□ 0.32
HDAC4P56524 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HDAC4P56524 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.02■□□□□ 0.32
HDAC4P56524 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.02■□□□□ 0.32
HDAC4P56524 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.02■□□□□ 0.32
HDAC4P56524 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.02■□□□□ 0.32
HDAC4P56524 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HDAC4P56524 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.02■□□□□ 0.32
HDAC4P56524 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.02■□□□□ 0.32
HDAC4P56524 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.02■□□□□ 0.32
HDAC4P56524 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
HDAC4P56524 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.02■□□□□ 0.32
HDAC4P56524 AC105339.1-204ENST00000636249 355 ntBASIC17.02■□□□□ 0.32
HDAC4P56524 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.02■□□□□ 0.32
HDAC4P56524 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HDAC4P56524 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.02■□□□□ 0.32
HDAC4P56524 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
HDAC4P56524 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
HDAC4P56524 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.31
HDAC4P56524 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HDAC4P56524 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
HDAC4P56524 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
HDAC4P56524 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.02■□□□□ 0.31
HDAC4P56524 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.01■□□□□ 0.31
HDAC4P56524 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
HDAC4P56524 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.01■□□□□ 0.31
HDAC4P56524 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
HDAC4P56524 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.01■□□□□ 0.31
HDAC4P56524 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.01■□□□□ 0.31
HDAC4P56524 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
HDAC4P56524 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
HDAC4P56524 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.01■□□□□ 0.31
HDAC4P56524 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
HDAC4P56524 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.01■□□□□ 0.31
HDAC4P56524 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.01■□□□□ 0.31
HDAC4P56524 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.01■□□□□ 0.31
HDAC4P56524 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.01■□□□□ 0.31
HDAC4P56524 AC092865.5-201ENST00000545435 363 ntBASIC17.01■□□□□ 0.31
HDAC4P56524 AP000842.3-202ENST00000569238 1080 ntBASIC17.01■□□□□ 0.31
HDAC4P56524 MIR3687-2-201ENST00000577708 61 ntBASIC17.01■□□□□ 0.31
HDAC4P56524 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.01■□□□□ 0.31
HDAC4P56524 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.01■□□□□ 0.31
HDAC4P56524 AC022145.2-201ENST00000598203 171 ntBASIC17.01■□□□□ 0.31
HDAC4P56524 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.01■□□□□ 0.31
HDAC4P56524 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.01■□□□□ 0.31
HDAC4P56524 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.01■□□□□ 0.31
HDAC4P56524 MIR3687-1-201ENST00000614492 61 ntBASIC17.01■□□□□ 0.31
HDAC4P56524 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
HDAC4P56524 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.01■□□□□ 0.31
HDAC4P56524 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
HDAC4P56524 LINC02199-201ENST00000506655 2702 ntBASIC17.01■□□□□ 0.31
HDAC4P56524 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.01■□□□□ 0.31
HDAC4P56524 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDAC4P56524 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HDAC4P56524 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HDAC4P56524 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HDAC4P56524 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17■□□□□ 0.31
HDAC4P56524 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC17■□□□□ 0.31
HDAC4P56524 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
HDAC4P56524 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HDAC4P56524 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17■□□□□ 0.31
HDAC4P56524 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HDAC4P56524 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HDAC4P56524 STOM-202ENST00000347359 870 ntTSL 2 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms