Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
FOXA1P55317 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
FOXA1P55317 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
FOXA1P55317 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
FOXA1P55317 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
FOXA1P55317 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.77■□□□□ 0.11
FOXA1P55317 AC022532.1-201ENST00000624563 1728 ntBASIC15.77■□□□□ 0.11
FOXA1P55317 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
FOXA1P55317 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.11
FOXA1P55317 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.77■□□□□ 0.11
FOXA1P55317 CICP13-201ENST00000422015 2789 ntBASIC15.76■□□□□ 0.11
FOXA1P55317 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA1P55317 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA1P55317 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.76■□□□□ 0.11
FOXA1P55317 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.76■□□□□ 0.11
FOXA1P55317 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
FOXA1P55317 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA1P55317 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA1P55317 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
FOXA1P55317 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.76■□□□□ 0.11
FOXA1P55317 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA1P55317 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.76■□□□□ 0.11
FOXA1P55317 AC136621.1-201ENST00000624017 2304 ntBASIC15.76■□□□□ 0.11
FOXA1P55317 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA1P55317 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA1P55317 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA1P55317 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.76■□□□□ 0.11
FOXA1P55317 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.76■□□□□ 0.11
FOXA1P55317 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.76■□□□□ 0.11
FOXA1P55317 AL078644.1-201ENST00000609881 752 ntBASIC15.76■□□□□ 0.11
FOXA1P55317 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.76■□□□□ 0.11
FOXA1P55317 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA1P55317 AC073439.1-201ENST00000624121 1774 ntBASIC15.76■□□□□ 0.11
FOXA1P55317 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.76■□□□□ 0.11
FOXA1P55317 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.76■□□□□ 0.11
FOXA1P55317 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
FOXA1P55317 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
FOXA1P55317 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA1P55317 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA1P55317 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA1P55317 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
FOXA1P55317 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA1P55317 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA1P55317 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA1P55317 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.75■□□□□ 0.11
FOXA1P55317 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
FOXA1P55317 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
FOXA1P55317 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.75■□□□□ 0.11
FOXA1P55317 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 HAUS4P1-201ENST00000406739 1145 ntBASIC15.75■□□□□ 0.11
FOXA1P55317 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC15.75■□□□□ 0.11
FOXA1P55317 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.75■□□□□ 0.11
FOXA1P55317 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.75■□□□□ 0.11
FOXA1P55317 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.75■□□□□ 0.11
FOXA1P55317 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 AP001005.1-201ENST00000571755 1248 ntBASIC15.75■□□□□ 0.11
FOXA1P55317 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.75■□□□□ 0.11
FOXA1P55317 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.75■□□□□ 0.11
FOXA1P55317 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC15.75■□□□□ 0.11
FOXA1P55317 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
FOXA1P55317 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.75■□□□□ 0.11
FOXA1P55317 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
FOXA1P55317 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15.75■□□□□ 0.11
FOXA1P55317 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA1P55317 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
FOXA1P55317 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
FOXA1P55317 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.74■□□□□ 0.11
FOXA1P55317 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 SSR4P1-203ENST00000599569 2260 ntBASIC15.74■□□□□ 0.11
FOXA1P55317 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.74■□□□□ 0.11
FOXA1P55317 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
FOXA1P55317 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
FOXA1P55317 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
FOXA1P55317 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
FOXA1P55317 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms