Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.81■□□□□ 0.28
NEK3P51956 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.81■□□□□ 0.28
NEK3P51956 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
NEK3P51956 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NEK3P51956 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.81■□□□□ 0.28
NEK3P51956 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.81■□□□□ 0.28
NEK3P51956 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.81■□□□□ 0.28
NEK3P51956 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NEK3P51956 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
NEK3P51956 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.81■□□□□ 0.28
NEK3P51956 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NEK3P51956 TSEN15P1-201ENST00000423257 515 ntBASIC16.81■□□□□ 0.28
NEK3P51956 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.81■□□□□ 0.28
NEK3P51956 AC023141.5-201ENST00000458585 616 ntBASIC16.81■□□□□ 0.28
NEK3P51956 AC079140.1-201ENST00000508039 487 ntBASIC16.81■□□□□ 0.28
NEK3P51956 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.81■□□□□ 0.28
NEK3P51956 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NEK3P51956 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.81■□□□□ 0.28
NEK3P51956 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEK3P51956 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEK3P51956 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.81■□□□□ 0.28
NEK3P51956 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NEK3P51956 GGT3P-204ENST00000453783 1664 ntBASIC16.81■□□□□ 0.28
NEK3P51956 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.81■□□□□ 0.28
NEK3P51956 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NEK3P51956 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NEK3P51956 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
NEK3P51956 AC006277.1-201ENST00000624348 1610 ntBASIC16.81■□□□□ 0.28
NEK3P51956 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEK3P51956 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
NEK3P51956 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.81■□□□□ 0.28
NEK3P51956 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.81■□□□□ 0.28
NEK3P51956 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NEK3P51956 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
NEK3P51956 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
NEK3P51956 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 WASH6P-202ENST00000359512 1437 ntBASIC16.8■□□□□ 0.28
NEK3P51956 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.8■□□□□ 0.28
NEK3P51956 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.8■□□□□ 0.28
NEK3P51956 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.8■□□□□ 0.28
NEK3P51956 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.8■□□□□ 0.28
NEK3P51956 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
NEK3P51956 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.8■□□□□ 0.28
NEK3P51956 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.8■□□□□ 0.28
NEK3P51956 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.8■□□□□ 0.28
NEK3P51956 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
NEK3P51956 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.8■□□□□ 0.28
NEK3P51956 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.8■□□□□ 0.28
NEK3P51956 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
NEK3P51956 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
NEK3P51956 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.8■□□□□ 0.28
NEK3P51956 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
NEK3P51956 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.8■□□□□ 0.28
NEK3P51956 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
NEK3P51956 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.8■□□□□ 0.28
NEK3P51956 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
NEK3P51956 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
NEK3P51956 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.8■□□□□ 0.28
NEK3P51956 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NEK3P51956 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.79■□□□□ 0.28
NEK3P51956 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NEK3P51956 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NEK3P51956 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
NEK3P51956 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NEK3P51956 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
NEK3P51956 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NEK3P51956 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NEK3P51956 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
NEK3P51956 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
NEK3P51956 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.79■□□□□ 0.28
NEK3P51956 AC092384.3-202ENST00000564646 2873 ntBASIC16.79■□□□□ 0.28
NEK3P51956 AL627223.1-201ENST00000416693 442 ntBASIC16.79■□□□□ 0.28
NEK3P51956 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.79■□□□□ 0.28
NEK3P51956 AC005237.2-201ENST00000434368 219 ntBASIC16.79■□□□□ 0.28
NEK3P51956 AL592309.1-201ENST00000443127 649 ntBASIC16.79■□□□□ 0.28
NEK3P51956 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.79■□□□□ 0.28
NEK3P51956 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.79■□□□□ 0.28
NEK3P51956 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.79■□□□□ 0.28
NEK3P51956 AC243562.1-201ENST00000560672 389 ntBASIC16.79■□□□□ 0.28
NEK3P51956 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.79■□□□□ 0.28
NEK3P51956 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms