Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HTTP42858 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.91■□□□□ 0.46
HTTP42858 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HTTP42858 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC17.91■□□□□ 0.46
HTTP42858 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.91■□□□□ 0.46
HTTP42858 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
HTTP42858 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
HTTP42858 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HTTP42858 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC17.91■□□□□ 0.46
HTTP42858 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC17.91■□□□□ 0.46
HTTP42858 RPL13AP19-201ENST00000434320 584 ntBASIC17.91■□□□□ 0.46
HTTP42858 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HTTP42858 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.91■□□□□ 0.46
HTTP42858 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HTTP42858 AC124947.2-201ENST00000547118 1133 ntBASIC17.91■□□□□ 0.46
HTTP42858 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
HTTP42858 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HTTP42858 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.91■□□□□ 0.46
HTTP42858 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
HTTP42858 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HTTP42858 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HTTP42858 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.91■□□□□ 0.46
HTTP42858 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HTTP42858 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HTTP42858 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
HTTP42858 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
HTTP42858 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HTTP42858 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC17.9■□□□□ 0.46
HTTP42858 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
HTTP42858 TUBB8P12-201ENST00000308911 1335 ntBASIC17.9■□□□□ 0.46
HTTP42858 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC17.9■□□□□ 0.46
HTTP42858 TUBB7P-202ENST00000428444 1305 ntBASIC17.9■□□□□ 0.46
HTTP42858 TUBB8P7-204ENST00000567960 1332 ntBASIC17.9■□□□□ 0.46
HTTP42858 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HTTP42858 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HTTP42858 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.9■□□□□ 0.46
HTTP42858 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HTTP42858 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HTTP42858 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HTTP42858 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
HTTP42858 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
HTTP42858 MAGEA5-201ENST00000446757 942 ntBASIC17.9■□□□□ 0.46
HTTP42858 AC245884.6-201ENST00000515672 1067 ntBASIC17.9■□□□□ 0.46
HTTP42858 AC009486.1-201ENST00000569860 813 ntBASIC17.9■□□□□ 0.46
HTTP42858 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
HTTP42858 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HTTP42858 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HTTP42858 AC018470.1-201ENST00000624790 3129 ntBASIC17.9■□□□□ 0.46
HTTP42858 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.9■□□□□ 0.46
HTTP42858 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HTTP42858 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.9■□□□□ 0.46
HTTP42858 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HTTP42858 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
HTTP42858 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC17.89■□□□□ 0.46
HTTP42858 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC17.89■□□□□ 0.46
HTTP42858 AC026410.3-201ENST00000514280 936 ntBASIC17.89■□□□□ 0.46
HTTP42858 ACR-203ENST00000529621 708 ntTSL 5 BASIC17.89■□□□□ 0.46
HTTP42858 AL133499.1-201ENST00000596207 608 ntBASIC17.89■□□□□ 0.46
HTTP42858 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC17.89■□□□□ 0.46
HTTP42858 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC17.89■□□□□ 0.46
HTTP42858 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HTTP42858 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HTTP42858 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.89■□□□□ 0.45
HTTP42858 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.89■□□□□ 0.45
HTTP42858 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC17.89■□□□□ 0.45
HTTP42858 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
HTTP42858 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC17.89■□□□□ 0.45
HTTP42858 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
HTTP42858 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HTTP42858 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HTTP42858 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC17.89■□□□□ 0.45
HTTP42858 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
HTTP42858 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HTTP42858 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC17.89■□□□□ 0.45
HTTP42858 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
HTTP42858 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
HTTP42858 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.89■□□□□ 0.45
HTTP42858 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.89■□□□□ 0.45
HTTP42858 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HTTP42858 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HTTP42858 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC17.89■□□□□ 0.45
HTTP42858 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
HTTP42858 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HTTP42858 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC17.89■□□□□ 0.45
HTTP42858 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HTTP42858 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.89■□□□□ 0.45
HTTP42858 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC17.89■□□□□ 0.45
HTTP42858 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HTTP42858 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HTTP42858 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC17.88■□□□□ 0.45
HTTP42858 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HTTP42858 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HTTP42858 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HTTP42858 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HTTP42858 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC17.88■□□□□ 0.45
HTTP42858 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC17.88■□□□□ 0.45
HTTP42858 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC17.88■□□□□ 0.45
HTTP42858 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC17.88■□□□□ 0.45
HTTP42858 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC17.88■□□□□ 0.45
HTTP42858 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms