Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.84■□□□□ 0.13
HNF4AP41235 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.84■□□□□ 0.13
HNF4AP41235 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.84■□□□□ 0.13
HNF4AP41235 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
HNF4AP41235 AL161645.1-201ENST00000622716 1255 ntBASIC15.84■□□□□ 0.13
HNF4AP41235 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.84■□□□□ 0.13
HNF4AP41235 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
HNF4AP41235 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
HNF4AP41235 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
HNF4AP41235 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
HNF4AP41235 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.84■□□□□ 0.13
HNF4AP41235 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
HNF4AP41235 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
HNF4AP41235 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HNF4AP41235 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
HNF4AP41235 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
HNF4AP41235 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
HNF4AP41235 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
HNF4AP41235 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
HNF4AP41235 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HNF4AP41235 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
HNF4AP41235 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.13
HNF4AP41235 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
HNF4AP41235 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HNF4AP41235 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HNF4AP41235 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HNF4AP41235 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HNF4AP41235 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HNF4AP41235 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.83■□□□□ 0.12
HNF4AP41235 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HNF4AP41235 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HNF4AP41235 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HNF4AP41235 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
HNF4AP41235 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.83■□□□□ 0.12
HNF4AP41235 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.83■□□□□ 0.12
HNF4AP41235 AC091812.2-201ENST00000619081 385 ntBASIC15.83■□□□□ 0.12
HNF4AP41235 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
HNF4AP41235 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
HNF4AP41235 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.83■□□□□ 0.12
HNF4AP41235 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HNF4AP41235 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HNF4AP41235 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.83■□□□□ 0.12
HNF4AP41235 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HNF4AP41235 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HNF4AP41235 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.83■□□□□ 0.12
HNF4AP41235 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.83■□□□□ 0.12
HNF4AP41235 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HNF4AP41235 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HNF4AP41235 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HNF4AP41235 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.83■□□□□ 0.12
HNF4AP41235 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HNF4AP41235 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HNF4AP41235 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.82■□□□□ 0.12
HNF4AP41235 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.82■□□□□ 0.12
HNF4AP41235 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
HNF4AP41235 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 MIR648-201ENST00000385046 94 ntBASIC15.82■□□□□ 0.12
HNF4AP41235 YBX2P1-201ENST00000394192 760 ntBASIC15.82■□□□□ 0.12
HNF4AP41235 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.82■□□□□ 0.12
HNF4AP41235 AC093724.1-201ENST00000448659 1027 ntBASIC15.82■□□□□ 0.12
HNF4AP41235 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.82■□□□□ 0.12
HNF4AP41235 AC112191.1-201ENST00000523689 701 ntBASIC15.82■□□□□ 0.12
HNF4AP41235 AC092865.5-201ENST00000545435 363 ntBASIC15.82■□□□□ 0.12
HNF4AP41235 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.82■□□□□ 0.12
HNF4AP41235 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.82■□□□□ 0.12
HNF4AP41235 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
HNF4AP41235 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.82■□□□□ 0.12
HNF4AP41235 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.82■□□□□ 0.12
HNF4AP41235 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 LINC00554-201ENST00000564841 3011 ntBASIC15.82■□□□□ 0.12
HNF4AP41235 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
HNF4AP41235 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms