Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.37■□□□□ 0.05
SOX3P41225 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.37■□□□□ 0.05
SOX3P41225 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.37■□□□□ 0.05
SOX3P41225 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.37■□□□□ 0.05
SOX3P41225 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.37■□□□□ 0.05
SOX3P41225 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
SOX3P41225 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.37■□□□□ 0.05
SOX3P41225 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.37■□□□□ 0.05
SOX3P41225 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
SOX3P41225 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
SOX3P41225 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
SOX3P41225 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.37■□□□□ 0.05
SOX3P41225 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
SOX3P41225 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 AL391256.1-201ENST00000443260 1855 ntBASIC15.37■□□□□ 0.05
SOX3P41225 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
SOX3P41225 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.37■□□□□ 0.05
SOX3P41225 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.37■□□□□ 0.05
SOX3P41225 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
SOX3P41225 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
SOX3P41225 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.36■□□□□ 0.05
SOX3P41225 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SOX3P41225 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SOX3P41225 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SOX3P41225 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
SOX3P41225 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
SOX3P41225 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SOX3P41225 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SOX3P41225 AL645728.1-201ENST00000366221 2101 ntBASIC15.36■□□□□ 0.05
SOX3P41225 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SOX3P41225 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
SOX3P41225 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SOX3P41225 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SOX3P41225 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.36■□□□□ 0.05
SOX3P41225 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.36■□□□□ 0.05
SOX3P41225 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SOX3P41225 RN7SL589P-201ENST00000481268 310 ntBASIC15.36■□□□□ 0.05
SOX3P41225 AP002490.2-201ENST00000524791 560 ntBASIC15.36■□□□□ 0.05
SOX3P41225 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.36■□□□□ 0.05
SOX3P41225 AC004835.2-201ENST00000603762 682 ntBASIC15.36■□□□□ 0.05
SOX3P41225 AC027612.4-201ENST00000605371 583 ntBASIC15.36■□□□□ 0.05
SOX3P41225 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
SOX3P41225 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.36■□□□□ 0.05
SOX3P41225 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SOX3P41225 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.36■□□□□ 0.05
SOX3P41225 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.36■□□□□ 0.05
SOX3P41225 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SOX3P41225 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.36■□□□□ 0.05
SOX3P41225 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SOX3P41225 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
SOX3P41225 AKAP8P1-201ENST00000434743 1349 ntBASIC15.36■□□□□ 0.05
SOX3P41225 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.36■□□□□ 0.05
SOX3P41225 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
SOX3P41225 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.36■□□□□ 0.05
SOX3P41225 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SOX3P41225 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.36■□□□□ 0.05
SOX3P41225 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.36■□□□□ 0.05
SOX3P41225 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SOX3P41225 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.36■□□□□ 0.05
SOX3P41225 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.36■□□□□ 0.05
SOX3P41225 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SOX3P41225 WASH6P-202ENST00000359512 1437 ntBASIC15.35■□□□□ 0.05
SOX3P41225 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.35■□□□□ 0.05
SOX3P41225 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.35■□□□□ 0.05
SOX3P41225 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SOX3P41225 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SOX3P41225 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SOX3P41225 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.35■□□□□ 0.05
SOX3P41225 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SOX3P41225 AC005052.1-201ENST00000625181 2492 ntBASIC15.35■□□□□ 0.05
SOX3P41225 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SOX3P41225 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SOX3P41225 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
SOX3P41225 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms