Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
HADHAP40939 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.5■□□□□ 0.23
HADHAP40939 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
HADHAP40939 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.5■□□□□ 0.23
HADHAP40939 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.5■□□□□ 0.23
HADHAP40939 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.5■□□□□ 0.23
HADHAP40939 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.5■□□□□ 0.23
HADHAP40939 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HADHAP40939 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.5■□□□□ 0.23
HADHAP40939 MCCD1P2-201ENST00000423228 335 ntBASIC16.5■□□□□ 0.23
HADHAP40939 AC004832.2-201ENST00000426397 482 ntBASIC16.5■□□□□ 0.23
HADHAP40939 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.5■□□□□ 0.23
HADHAP40939 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.5■□□□□ 0.23
HADHAP40939 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.5■□□□□ 0.23
HADHAP40939 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.5■□□□□ 0.23
HADHAP40939 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
HADHAP40939 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.5■□□□□ 0.23
HADHAP40939 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.5■□□□□ 0.23
HADHAP40939 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.5■□□□□ 0.23
HADHAP40939 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.5■□□□□ 0.23
HADHAP40939 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HADHAP40939 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.5■□□□□ 0.23
HADHAP40939 WASH6P-202ENST00000359512 1437 ntBASIC16.5■□□□□ 0.23
HADHAP40939 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
HADHAP40939 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HADHAP40939 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.5■□□□□ 0.23
HADHAP40939 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HADHAP40939 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
HADHAP40939 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 REXO1L8P-201ENST00000604378 1897 ntBASIC16.5■□□□□ 0.23
HADHAP40939 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
HADHAP40939 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.5■□□□□ 0.23
HADHAP40939 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HADHAP40939 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.49■□□□□ 0.23
HADHAP40939 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.49■□□□□ 0.23
HADHAP40939 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.49■□□□□ 0.23
HADHAP40939 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
HADHAP40939 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
HADHAP40939 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.49■□□□□ 0.23
HADHAP40939 MIR648-201ENST00000385046 94 ntBASIC16.49■□□□□ 0.23
HADHAP40939 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.49■□□□□ 0.23
HADHAP40939 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.49■□□□□ 0.23
HADHAP40939 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.49■□□□□ 0.23
HADHAP40939 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.49■□□□□ 0.23
HADHAP40939 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.49■□□□□ 0.23
HADHAP40939 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HADHAP40939 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
HADHAP40939 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.49■□□□□ 0.23
HADHAP40939 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.48■□□□□ 0.23
HADHAP40939 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HADHAP40939 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HADHAP40939 MST1L-201ENST00000442552 2185 ntBASIC16.48■□□□□ 0.23
HADHAP40939 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.48■□□□□ 0.23
HADHAP40939 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.48■□□□□ 0.23
HADHAP40939 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HADHAP40939 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HADHAP40939 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.48■□□□□ 0.23
HADHAP40939 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.48■□□□□ 0.23
HADHAP40939 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.48■□□□□ 0.23
HADHAP40939 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HADHAP40939 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.48■□□□□ 0.23
HADHAP40939 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.48■□□□□ 0.23
HADHAP40939 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HADHAP40939 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
HADHAP40939 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HADHAP40939 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HADHAP40939 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms