Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC20.17■□□□□ 0.82
CACNA1FO60840 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC20.17■□□□□ 0.82
CACNA1FO60840 AC140912.1-201ENST00000577171 1054 ntBASIC20.17■□□□□ 0.82
CACNA1FO60840 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC20.17■□□□□ 0.82
CACNA1FO60840 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CACNA1FO60840 PCDH8P1-201ENST00000428983 2773 ntBASIC20.17■□□□□ 0.82
CACNA1FO60840 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC20.17■□□□□ 0.82
CACNA1FO60840 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC20.17■□□□□ 0.82
CACNA1FO60840 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC20.17■□□□□ 0.82
CACNA1FO60840 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CACNA1FO60840 PIN1P1-201ENST00000412108 996 ntBASIC20.17■□□□□ 0.82
CACNA1FO60840 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC20.17■□□□□ 0.82
CACNA1FO60840 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CACNA1FO60840 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC20.17■□□□□ 0.82
CACNA1FO60840 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC20.17■□□□□ 0.82
CACNA1FO60840 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC20.17■□□□□ 0.82
CACNA1FO60840 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC20.17■□□□□ 0.82
CACNA1FO60840 COQ6-210ENST00000554920 649 ntTSL 3 BASIC20.17■□□□□ 0.82
CACNA1FO60840 MIR4313-201ENST00000580760 101 ntBASIC20.17■□□□□ 0.82
CACNA1FO60840 TEX48-202ENST00000612244 662 ntTSL 3 BASIC20.17■□□□□ 0.82
CACNA1FO60840 AC022188.1-201ENST00000620960 1664 ntBASIC20.17■□□□□ 0.82
CACNA1FO60840 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC20.17■□□□□ 0.82
CACNA1FO60840 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC20.17■□□□□ 0.82
CACNA1FO60840 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CACNA1FO60840 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CACNA1FO60840 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CACNA1FO60840 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC20.16■□□□□ 0.82
CACNA1FO60840 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CACNA1FO60840 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CACNA1FO60840 CYP2AB1P-202ENST00000454440 1456 ntBASIC20.16■□□□□ 0.82
CACNA1FO60840 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
CACNA1FO60840 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CACNA1FO60840 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CACNA1FO60840 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC20.16■□□□□ 0.82
CACNA1FO60840 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC20.16■□□□□ 0.82
CACNA1FO60840 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CACNA1FO60840 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CACNA1FO60840 POLD4-211ENST00000539074 714 ntTSL 3 BASIC20.16■□□□□ 0.82
CACNA1FO60840 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC20.16■□□□□ 0.82
CACNA1FO60840 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CACNA1FO60840 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CACNA1FO60840 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CACNA1FO60840 LOX-206ENST00000639739 1626 ntTSL 5 BASIC20.16■□□□□ 0.82
CACNA1FO60840 AL365203.3-201ENST00000609742 2057 ntBASIC20.16■□□□□ 0.82
CACNA1FO60840 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC20.16■□□□□ 0.82
CACNA1FO60840 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CACNA1FO60840 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CACNA1FO60840 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.16■□□□□ 0.82
CACNA1FO60840 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CACNA1FO60840 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC20.16■□□□□ 0.82
CACNA1FO60840 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC20.15■□□□□ 0.82
CACNA1FO60840 KRT18P43-201ENST00000469825 1281 ntBASIC20.15■□□□□ 0.82
CACNA1FO60840 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC20.15■□□□□ 0.82
CACNA1FO60840 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC20.15■□□□□ 0.82
CACNA1FO60840 BRI3BPP1-201ENST00000594224 787 ntBASIC20.15■□□□□ 0.82
CACNA1FO60840 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC20.15■□□□□ 0.82
CACNA1FO60840 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC20.15■□□□□ 0.82
CACNA1FO60840 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1FO60840 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1FO60840 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC20.15■□□□□ 0.82
CACNA1FO60840 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1FO60840 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1FO60840 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC20.15■□□□□ 0.82
CACNA1FO60840 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1FO60840 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1FO60840 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CACNA1FO60840 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1FO60840 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1FO60840 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1FO60840 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC20.15■□□□□ 0.82
CACNA1FO60840 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1FO60840 DOC2GP-204ENST00000639052 2548 ntBASIC20.15■□□□□ 0.82
CACNA1FO60840 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1FO60840 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC20.15■□□□□ 0.82
CACNA1FO60840 DFFBP1-201ENST00000433250 979 ntBASIC20.15■□□□□ 0.82
CACNA1FO60840 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC20.15■□□□□ 0.82
CACNA1FO60840 CDK4-206ENST00000549606 558 ntTSL 2 BASIC20.15■□□□□ 0.82
CACNA1FO60840 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC20.15■□□□□ 0.82
CACNA1FO60840 IGHV3-72-202ENST00000621503 303 ntBASIC20.15■□□□□ 0.82
CACNA1FO60840 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
CACNA1FO60840 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1FO60840 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1FO60840 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CACNA1FO60840 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1FO60840 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1FO60840 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CACNA1FO60840 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CACNA1FO60840 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
CACNA1FO60840 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.14■□□□□ 0.82
CACNA1FO60840 AL121723.1-201ENST00000445194 1519 ntBASIC20.14■□□□□ 0.82
CACNA1FO60840 AMT-232ENST00000636199 1546 ntTSL 5 BASIC20.14■□□□□ 0.82
CACNA1FO60840 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CACNA1FO60840 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC20.14■□□□□ 0.82
CACNA1FO60840 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CACNA1FO60840 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CACNA1FO60840 AL512638.1-201ENST00000457493 794 ntBASIC20.14■□□□□ 0.81
CACNA1FO60840 RN7SL692P-201ENST00000464677 288 ntBASIC20.14■□□□□ 0.81
CACNA1FO60840 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC20.14■□□□□ 0.81
CACNA1FO60840 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
CACNA1FO60840 UBL5-208ENST00000593087 320 ntTSL 3 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms