Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM38O00635 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM38O00635 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM38O00635 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM38O00635 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TRIM38O00635 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
TRIM38O00635 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM38O00635 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 AL365203.3-201ENST00000609742 2057 ntBASIC16.42■□□□□ 0.22
TRIM38O00635 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM38O00635 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
TRIM38O00635 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
TRIM38O00635 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM38O00635 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM38O00635 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM38O00635 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
TRIM38O00635 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM38O00635 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM38O00635 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.42■□□□□ 0.22
TRIM38O00635 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM38O00635 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM38O00635 AC125807.1-201ENST00000483097 614 ntBASIC16.42■□□□□ 0.22
TRIM38O00635 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM38O00635 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.42■□□□□ 0.22
TRIM38O00635 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
TRIM38O00635 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM38O00635 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM38O00635 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM38O00635 HYMAI-201ENST00000635591 3347 ntBASIC16.42■□□□□ 0.22
TRIM38O00635 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM38O00635 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM38O00635 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM38O00635 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM38O00635 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM38O00635 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM38O00635 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM38O00635 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM38O00635 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.41■□□□□ 0.22
TRIM38O00635 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
TRIM38O00635 FO538757.1-201ENST00000623083 1397 ntBASIC16.41■□□□□ 0.22
TRIM38O00635 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
TRIM38O00635 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 SLC22A20-204ENST00000530038 1673 ntBASIC16.41■□□□□ 0.22
TRIM38O00635 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM38O00635 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
TRIM38O00635 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.41■□□□□ 0.22
TRIM38O00635 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
TRIM38O00635 SLC25A39P2-201ENST00000537614 270 ntBASIC16.41■□□□□ 0.22
TRIM38O00635 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.41■□□□□ 0.22
TRIM38O00635 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.41■□□□□ 0.22
TRIM38O00635 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM38O00635 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM38O00635 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
TRIM38O00635 AC084121.4-201ENST00000641598 221 ntBASIC16.41■□□□□ 0.22
TRIM38O00635 AF228730.8-201ENST00000642140 221 ntBASIC16.41■□□□□ 0.22
TRIM38O00635 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 AC024909.3-201ENST00000611513 2257 ntBASIC16.41■□□□□ 0.22
TRIM38O00635 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM38O00635 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM38O00635 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM38O00635 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms