Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 LINC01144-201ENST00000626198 1710 ntBASIC11.97□□□□□ -0.49
SMKR1H3BMG3 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 AC020658.6-201ENST00000623564 1870 ntBASIC11.96□□□□□ -0.49
SMKR1H3BMG3 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 AL020989.1-201ENST00000422979 469 ntBASIC11.96□□□□□ -0.49
SMKR1H3BMG3 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 AC009533.2-201ENST00000543664 586 ntBASIC11.96□□□□□ -0.49
SMKR1H3BMG3 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 TERC-201ENST00000602385 541 ntBASIC11.96□□□□□ -0.49
SMKR1H3BMG3 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
SMKR1H3BMG3 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 API5-202ENST00000420461 2009 ntTSL 2 BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 CICP4-201ENST00000447359 2812 ntBASIC11.96□□□□□ -0.5
SMKR1H3BMG3 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
SMKR1H3BMG3 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 GOLGA8DP-202ENST00000341390 2184 ntBASIC11.95□□□□□ -0.5
SMKR1H3BMG3 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC11.95□□□□□ -0.5
SMKR1H3BMG3 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 MIR648-201ENST00000385046 94 ntBASIC11.95□□□□□ -0.5
SMKR1H3BMG3 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 NABP1-203ENST00000409510 843 ntTSL 5 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 TSPY22P-201ENST00000427496 604 ntBASIC11.95□□□□□ -0.5
SMKR1H3BMG3 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 AC091607.1-201ENST00000490318 1060 ntBASIC11.95□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms