Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.14■□□□□ 0.33
CDH9Q9ULB4 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH9Q9ULB4 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 AL691432.1-201ENST00000596308 1422 ntBASIC17.13■□□□□ 0.33
CDH9Q9ULB4 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 SERBP1P3-201ENST00000459980 809 ntBASIC17.13■□□□□ 0.33
CDH9Q9ULB4 AC243562.2-201ENST00000561247 970 ntBASIC17.13■□□□□ 0.33
CDH9Q9ULB4 MIR3197-201ENST00000582241 73 ntBASIC17.13■□□□□ 0.33
CDH9Q9ULB4 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH9Q9ULB4 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH9Q9ULB4 AC099398.1-201ENST00000567919 2776 ntBASIC17.12■□□□□ 0.33
CDH9Q9ULB4 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH9Q9ULB4 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDH9Q9ULB4 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDH9Q9ULB4 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.12■□□□□ 0.33
CDH9Q9ULB4 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDH9Q9ULB4 AC022144.1-201ENST00000602255 1580 ntBASIC17.12■□□□□ 0.33
CDH9Q9ULB4 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH9Q9ULB4 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH9Q9ULB4 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH9Q9ULB4 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH9Q9ULB4 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH9Q9ULB4 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH9Q9ULB4 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.12■□□□□ 0.33
CDH9Q9ULB4 AC004987.2-201ENST00000395959 1148 ntBASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms