Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 GCK-202ENST00000345378 2421 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 AL009178.2-201ENST00000597278 2719 ntBASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 AL353732.1-201ENST00000569618 1459 ntBASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 MRPL20P1-201ENST00000400819 433 ntBASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 TPM4P1-201ENST00000436100 807 ntBASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 AC092910.1-201ENST00000482027 1129 ntBASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 MIR4492-201ENST00000581627 80 ntBASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 AP005117.1-202ENST00000581724 1908 ntBASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 AC131009.4-201ENST00000624048 1740 ntBASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CCDC39Q9UFE4 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 AC093909.1-201ENST00000504731 1122 ntBASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 AC107918.2-201ENST00000530817 355 ntBASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 AC005412.3-201ENST00000580309 715 ntBASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 AP002414.2-201ENST00000591780 3365 ntBASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC39Q9UFE4 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.91■□□□□ 0.62
CCDC39Q9UFE4 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms