Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 AC004987.2-201ENST00000395959 1148 ntBASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 AL591846.1-201ENST00000451736 433 ntBASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 NAT9-224ENST00000583757 583 ntTSL 3 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 KC6-205ENST00000599934 556 ntTSL 4 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 AC015967.2-201ENST00000624092 234 ntBASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 AC006435.4-201ENST00000625037 234 ntBASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 AL356737.1-201ENST00000634391 234 ntBASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 REXO1L8P-201ENST00000604378 1897 ntBASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 RPS3-201ENST00000278572 907 ntTSL 3 BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 C2orf27AP3-201ENST00000434123 579 ntBASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 AKR7A2P1-201ENST00000460134 915 ntBASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 HNRNPA1P48-202ENST00000565308 961 ntBASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 MIR4741-201ENST00000579822 90 ntBASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 AL354718.3-201ENST00000616414 581 ntBASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 CR382287.1-201ENST00000623954 586 ntBASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF541Q9H0D2 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 HARS-202ENST00000415192 1401 ntTSL 2 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 GGCT-203ENST00000409144 836 ntTSL 2 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 AC005077.2-201ENST00000449786 690 ntBASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 HIST2H2BC-201ENST00000498492 580 ntBASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 AC023310.1-201ENST00000554836 735 ntBASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms