Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 MIR3687-2-201ENST00000577708 61 ntBASIC12.61□□□□□ -0.39
CCDC140Q96MF4 MIR4321-201ENST00000592276 80 ntBASIC12.61□□□□□ -0.39
CCDC140Q96MF4 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 MIR3687-1-201ENST00000614492 61 ntBASIC12.61□□□□□ -0.39
CCDC140Q96MF4 SPTSSB-204ENST00000617024 1292 ntBASIC12.61□□□□□ -0.39
CCDC140Q96MF4 AC105339.1-204ENST00000636249 355 ntBASIC12.61□□□□□ -0.39
CCDC140Q96MF4 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 SUPT20HL2-201ENST00000486479 2409 ntBASIC12.61□□□□□ -0.39
CCDC140Q96MF4 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 AL365203.3-201ENST00000609742 2057 ntBASIC12.6□□□□□ -0.39
CCDC140Q96MF4 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 CDC14C-201ENST00000428251 1719 ntBASIC12.6□□□□□ -0.39
CCDC140Q96MF4 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 STOM-202ENST00000347359 870 ntTSL 2 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 MIR346-201ENST00000362234 95 ntBASIC12.6□□□□□ -0.39
CCDC140Q96MF4 PTMS-202ENST00000389462 773 ntTSL 2 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 PP14571-201ENST00000404327 934 ntTSL 2 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 AL592309.1-201ENST00000443127 649 ntBASIC12.6□□□□□ -0.39
CCDC140Q96MF4 AC112482.1-201ENST00000492080 688 ntBASIC12.6□□□□□ -0.39
CCDC140Q96MF4 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 LINC02447-202ENST00000501888 2146 ntBASIC12.6□□□□□ -0.39
CCDC140Q96MF4 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 AL513210.1-201ENST00000629608 234 ntBASIC12.6□□□□□ -0.39
CCDC140Q96MF4 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CCDC140Q96MF4 AC008894.3-201ENST00000624324 3103 ntBASIC12.6□□□□□ -0.39
CCDC140Q96MF4 AC069224.1-201ENST00000566372 1715 ntBASIC12.59□□□□□ -0.39
CCDC140Q96MF4 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms