Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AL645728.2-201ENST00000641974 660 ntBASIC12.27□□□□□ -0.45
LINC00477Q96M19 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00477Q96M19 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00477Q96M19 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00477Q96M19 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00477Q96M19 ACE-203ENST00000413513 2237 ntTSL 2 BASIC12.27□□□□□ -0.45
LINC00477Q96M19 AC112504.1-201ENST00000623415 1841 ntBASIC12.27□□□□□ -0.45
LINC00477Q96M19 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
LINC00477Q96M19 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00477Q96M19 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00477Q96M19 AC010491.1-201ENST00000563101 2797 ntBASIC12.27□□□□□ -0.45
LINC00477Q96M19 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00477Q96M19 VILL-207ENST00000465644 1857 ntTSL 5 BASIC12.27□□□□□ -0.45
LINC00477Q96M19 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
LINC00477Q96M19 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC12.27□□□□□ -0.45
LINC00477Q96M19 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00477Q96M19 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00477Q96M19 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00477Q96M19 AP005117.1-202ENST00000581724 1908 ntBASIC12.27□□□□□ -0.45
LINC00477Q96M19 SUPT20HL2-201ENST00000486479 2409 ntBASIC12.27□□□□□ -0.45
LINC00477Q96M19 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00477Q96M19 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00477Q96M19 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 PRSS29P-201ENST00000440800 595 ntBASIC12.26□□□□□ -0.45
LINC00477Q96M19 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 FAM197Y8-203ENST00000450145 560 ntBASIC12.26□□□□□ -0.45
LINC00477Q96M19 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 MOK-208ENST00000519058 917 ntTSL 2 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 TOLLIP-AS1-201ENST00000530897 939 ntBASIC12.26□□□□□ -0.45
LINC00477Q96M19 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 AL031432.2-201ENST00000566714 459 ntBASIC12.26□□□□□ -0.45
LINC00477Q96M19 AL928711.1-201ENST00000570165 459 ntBASIC12.26□□□□□ -0.45
LINC00477Q96M19 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 AC004790.2-201ENST00000623588 572 ntBASIC12.26□□□□□ -0.45
LINC00477Q96M19 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 AC132872.4-202ENST00000622924 2756 ntBASIC12.26□□□□□ -0.45
LINC00477Q96M19 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC12.26□□□□□ -0.45
LINC00477Q96M19 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
LINC00477Q96M19 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 AC069224.1-201ENST00000566372 1715 ntBASIC12.25□□□□□ -0.45
LINC00477Q96M19 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 MYB-242ENST00000618728 3545 ntTSL 5 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 MYB-201ENST00000316528 3571 ntTSL 5 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 MYB-241ENST00000616088 3573 ntTSL 5 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms