Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 AC008267.7-201ENST00000624570 1194 ntBASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 KRT18P34-201ENST00000488218 1270 ntBASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLIP3Q96DZ5 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 SLC25A39P2-201ENST00000537614 270 ntBASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 LINC01225-203ENST00000563550 1244 ntBASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
CLIP3Q96DZ5 AP001059.3-201ENST00000619053 235 ntBASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms