Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
BRF1Q92994 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
BRF1Q92994 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRF1Q92994 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC19.17■□□□□ 0.66
BRF1Q92994 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC19.17■□□□□ 0.66
BRF1Q92994 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRF1Q92994 AC112504.1-201ENST00000623415 1841 ntBASIC19.17■□□□□ 0.66
BRF1Q92994 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRF1Q92994 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.17■□□□□ 0.66
BRF1Q92994 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC19.17■□□□□ 0.66
BRF1Q92994 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.17■□□□□ 0.66
BRF1Q92994 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
BRF1Q92994 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.17■□□□□ 0.66
BRF1Q92994 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC19.17■□□□□ 0.66
BRF1Q92994 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.17■□□□□ 0.66
BRF1Q92994 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.17■□□□□ 0.66
BRF1Q92994 AC027307.2-201ENST00000591252 911 ntBASIC19.17■□□□□ 0.66
BRF1Q92994 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC19.17■□□□□ 0.66
BRF1Q92994 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
BRF1Q92994 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC19.17■□□□□ 0.66
BRF1Q92994 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC19.17■□□□□ 0.66
BRF1Q92994 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC19.17■□□□□ 0.66
BRF1Q92994 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRF1Q92994 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
BRF1Q92994 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRF1Q92994 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRF1Q92994 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRF1Q92994 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC19.17■□□□□ 0.66
BRF1Q92994 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRF1Q92994 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRF1Q92994 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC19.17■□□□□ 0.66
BRF1Q92994 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.17■□□□□ 0.66
BRF1Q92994 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
BRF1Q92994 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRF1Q92994 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRF1Q92994 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC19.16■□□□□ 0.66
BRF1Q92994 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC19.16■□□□□ 0.66
BRF1Q92994 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC19.16■□□□□ 0.66
BRF1Q92994 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BRF1Q92994 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC19.16■□□□□ 0.66
BRF1Q92994 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRF1Q92994 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC19.16■□□□□ 0.66
BRF1Q92994 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRF1Q92994 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.16■□□□□ 0.66
BRF1Q92994 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRF1Q92994 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC19.16■□□□□ 0.66
BRF1Q92994 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC19.16■□□□□ 0.66
BRF1Q92994 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC19.16■□□□□ 0.66
BRF1Q92994 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.16■□□□□ 0.66
BRF1Q92994 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC19.16■□□□□ 0.66
BRF1Q92994 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.16■□□□□ 0.66
BRF1Q92994 FAM86C2P-203ENST00000528684 1004 ntBASIC19.16■□□□□ 0.66
BRF1Q92994 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRF1Q92994 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
BRF1Q92994 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
BRF1Q92994 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
BRF1Q92994 AC026120.1-201ENST00000611536 926 ntBASIC19.16■□□□□ 0.66
BRF1Q92994 AC008267.7-201ENST00000624570 1194 ntBASIC19.16■□□□□ 0.66
BRF1Q92994 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC19.16■□□□□ 0.66
BRF1Q92994 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC19.16■□□□□ 0.66
BRF1Q92994 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRF1Q92994 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRF1Q92994 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BRF1Q92994 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.16■□□□□ 0.66
BRF1Q92994 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC19.16■□□□□ 0.66
BRF1Q92994 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC19.16■□□□□ 0.66
BRF1Q92994 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRF1Q92994 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
BRF1Q92994 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRF1Q92994 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRF1Q92994 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC19.16■□□□□ 0.66
BRF1Q92994 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
BRF1Q92994 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
BRF1Q92994 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC19.15■□□□□ 0.66
BRF1Q92994 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC19.15■□□□□ 0.66
BRF1Q92994 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC19.15■□□□□ 0.66
BRF1Q92994 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC19.15■□□□□ 0.66
BRF1Q92994 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC19.15■□□□□ 0.66
BRF1Q92994 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
BRF1Q92994 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
BRF1Q92994 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
BRF1Q92994 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
BRF1Q92994 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
BRF1Q92994 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
BRF1Q92994 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC19.15■□□□□ 0.66
BRF1Q92994 SPCS2P4-201ENST00000436160 681 ntBASIC19.15■□□□□ 0.66
BRF1Q92994 MKNK2P1-201ENST00000437526 628 ntBASIC19.15■□□□□ 0.66
BRF1Q92994 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.15■□□□□ 0.66
BRF1Q92994 SPDYE11-202ENST00000450699 704 ntBASIC19.15■□□□□ 0.66
BRF1Q92994 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.15■□□□□ 0.66
BRF1Q92994 RN7SL589P-201ENST00000481268 310 ntBASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms