Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 AMT-206ENST00000458307 1860 ntTSL 2 BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 AC104306.2-201ENST00000451877 341 ntBASIC21.79■■□□□ 1.08
NPHP3Q7Z494 AC022137.2-201ENST00000503482 481 ntBASIC21.79■■□□□ 1.08
NPHP3Q7Z494 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 KRT18P64-201ENST00000434946 1219 ntBASIC21.78■■□□□ 1.08
NPHP3Q7Z494 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 AL008638.5-201ENST00000623814 1298 ntBASIC21.78■■□□□ 1.08
NPHP3Q7Z494 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP3Q7Z494 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC21.77■■□□□ 1.08
NPHP3Q7Z494 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
NPHP3Q7Z494 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
NPHP3Q7Z494 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC21.77■■□□□ 1.08
NPHP3Q7Z494 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
NPHP3Q7Z494 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC21.77■■□□□ 1.08
NPHP3Q7Z494 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC21.77■■□□□ 1.08
NPHP3Q7Z494 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP3Q7Z494 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC21.77■■□□□ 1.08
NPHP3Q7Z494 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC21.77■■□□□ 1.08
NPHP3Q7Z494 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.77■■□□□ 1.08
NPHP3Q7Z494 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
NPHP3Q7Z494 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP3Q7Z494 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC21.77■■□□□ 1.08
NPHP3Q7Z494 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP3Q7Z494 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
NPHP3Q7Z494 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 RPS3-201ENST00000278572 907 ntTSL 3 BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 USP40-206ENST00000443711 628 ntTSL 2 BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 AC245100.5-201ENST00000452108 331 ntBASIC21.77■■□□□ 1.07
NPHP3Q7Z494 PFN2-215ENST00000497148 743 ntTSL 4 BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 SLED1-202ENST00000512051 380 ntBASIC21.77■■□□□ 1.07
NPHP3Q7Z494 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 AC244452.3-201ENST00000636814 210 ntBASIC21.77■■□□□ 1.07
NPHP3Q7Z494 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC21.77■■□□□ 1.07
NPHP3Q7Z494 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms