Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 MSRA-206ENST00000521209 814 ntTSL 3 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 SART3-203ENST00000546611 1184 ntBASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 AC064862.7-201ENST00000604520 867 ntBASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 AL139011.1-202ENST00000642063 584 ntBASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
PPP4R4Q6NUP7 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
PPP4R4Q6NUP7 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
PPP4R4Q6NUP7 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
PPP4R4Q6NUP7 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PPP4R4Q6NUP7 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
PPP4R4Q6NUP7 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.71■□□□□ 0.1
PPP4R4Q6NUP7 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 PPT1-215ENST00000641471 2368 ntBASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 NKAPP1-205ENST00000585790 367 ntBASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 GGT3P-204ENST00000453783 1664 ntBASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PPP4R4Q6NUP7 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 MED22-202ENST00000371999 987 ntTSL 3 BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 MRPL3P1-201ENST00000400109 1033 ntBASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 AL773604.1-201ENST00000617417 272 ntBASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 AL139288.1-201ENST00000623748 933 ntBASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms