Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.6■□□□□ 0.41
KRT39Q6A163 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.6■□□□□ 0.41
KRT39Q6A163 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
KRT39Q6A163 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
KRT39Q6A163 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.59■□□□□ 0.41
KRT39Q6A163 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
KRT39Q6A163 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
KRT39Q6A163 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
KRT39Q6A163 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
KRT39Q6A163 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.59■□□□□ 0.41
KRT39Q6A163 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.59■□□□□ 0.41
KRT39Q6A163 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.59■□□□□ 0.41
KRT39Q6A163 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
KRT39Q6A163 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
KRT39Q6A163 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
KRT39Q6A163 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
KRT39Q6A163 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.59■□□□□ 0.41
KRT39Q6A163 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.59■□□□□ 0.41
KRT39Q6A163 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.59■□□□□ 0.41
KRT39Q6A163 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
KRT39Q6A163 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
KRT39Q6A163 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.59■□□□□ 0.41
KRT39Q6A163 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.59■□□□□ 0.41
KRT39Q6A163 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
KRT39Q6A163 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
KRT39Q6A163 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
KRT39Q6A163 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
KRT39Q6A163 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
KRT39Q6A163 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.59■□□□□ 0.41
KRT39Q6A163 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
KRT39Q6A163 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
KRT39Q6A163 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
KRT39Q6A163 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
KRT39Q6A163 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
KRT39Q6A163 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
KRT39Q6A163 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
KRT39Q6A163 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.58■□□□□ 0.41
KRT39Q6A163 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
KRT39Q6A163 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
KRT39Q6A163 UXT-AS1-201ENST00000590504 1525 ntBASIC17.58■□□□□ 0.41
KRT39Q6A163 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
KRT39Q6A163 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.58■□□□□ 0.41
KRT39Q6A163 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
KRT39Q6A163 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17.58■□□□□ 0.41
KRT39Q6A163 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.58■□□□□ 0.41
KRT39Q6A163 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.58■□□□□ 0.41
KRT39Q6A163 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
KRT39Q6A163 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
KRT39Q6A163 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
KRT39Q6A163 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
KRT39Q6A163 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
KRT39Q6A163 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.4
KRT39Q6A163 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.58■□□□□ 0.4
KRT39Q6A163 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.58■□□□□ 0.4
KRT39Q6A163 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.58■□□□□ 0.4
KRT39Q6A163 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.58■□□□□ 0.4
KRT39Q6A163 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.58■□□□□ 0.4
KRT39Q6A163 AC024267.1-201ENST00000582320 895 ntBASIC17.58■□□□□ 0.4
KRT39Q6A163 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.58■□□□□ 0.4
KRT39Q6A163 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.58■□□□□ 0.4
KRT39Q6A163 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
KRT39Q6A163 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
KRT39Q6A163 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
KRT39Q6A163 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
KRT39Q6A163 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC17.58■□□□□ 0.4
KRT39Q6A163 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
KRT39Q6A163 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.4
KRT39Q6A163 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.58■□□□□ 0.4
KRT39Q6A163 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
KRT39Q6A163 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
KRT39Q6A163 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.58■□□□□ 0.4
KRT39Q6A163 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.57■□□□□ 0.4
KRT39Q6A163 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.57■□□□□ 0.4
KRT39Q6A163 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
KRT39Q6A163 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
KRT39Q6A163 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
KRT39Q6A163 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
KRT39Q6A163 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
KRT39Q6A163 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
KRT39Q6A163 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
KRT39Q6A163 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
KRT39Q6A163 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.57■□□□□ 0.4
KRT39Q6A163 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
KRT39Q6A163 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
KRT39Q6A163 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.57■□□□□ 0.4
KRT39Q6A163 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
KRT39Q6A163 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
KRT39Q6A163 FAM220BP-201ENST00000377689 816 ntBASIC17.57■□□□□ 0.4
KRT39Q6A163 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.57■□□□□ 0.4
KRT39Q6A163 AC004461.1-201ENST00000412461 403 ntBASIC17.57■□□□□ 0.4
KRT39Q6A163 AC211486.1-202ENST00000416371 468 ntBASIC17.57■□□□□ 0.4
KRT39Q6A163 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.57■□□□□ 0.4
KRT39Q6A163 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC17.57■□□□□ 0.4
KRT39Q6A163 AC211476.1-201ENST00000503899 468 ntBASIC17.57■□□□□ 0.4
KRT39Q6A163 AP000344.2-201ENST00000512987 629 ntBASIC17.57■□□□□ 0.4
KRT39Q6A163 SLC25A39P2-201ENST00000537614 270 ntBASIC17.57■□□□□ 0.4
KRT39Q6A163 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms