Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
USP39Q53GS9 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
USP39Q53GS9 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.55■□□□□ 0.24
USP39Q53GS9 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
USP39Q53GS9 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP39Q53GS9 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
USP39Q53GS9 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
USP39Q53GS9 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP39Q53GS9 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP39Q53GS9 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP39Q53GS9 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
USP39Q53GS9 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.55■□□□□ 0.24
USP39Q53GS9 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.55■□□□□ 0.24
USP39Q53GS9 RPL37AP1-201ENST00000412502 279 ntBASIC16.55■□□□□ 0.24
USP39Q53GS9 ARSEP1-201ENST00000420443 635 ntBASIC16.55■□□□□ 0.24
USP39Q53GS9 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.55■□□□□ 0.24
USP39Q53GS9 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.55■□□□□ 0.24
USP39Q53GS9 AC098859.1-201ENST00000502915 1238 ntBASIC16.55■□□□□ 0.24
USP39Q53GS9 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.55■□□□□ 0.24
USP39Q53GS9 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.55■□□□□ 0.24
USP39Q53GS9 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
USP39Q53GS9 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP39Q53GS9 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
USP39Q53GS9 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP39Q53GS9 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP39Q53GS9 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
USP39Q53GS9 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
USP39Q53GS9 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
USP39Q53GS9 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP39Q53GS9 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
USP39Q53GS9 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
USP39Q53GS9 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP39Q53GS9 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP39Q53GS9 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP39Q53GS9 TNRC18P3-201ENST00000441896 2691 ntBASIC16.54■□□□□ 0.24
USP39Q53GS9 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USP39Q53GS9 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USP39Q53GS9 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.54■□□□□ 0.24
USP39Q53GS9 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
USP39Q53GS9 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
USP39Q53GS9 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP39Q53GS9 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
USP39Q53GS9 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP39Q53GS9 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP39Q53GS9 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.54■□□□□ 0.24
USP39Q53GS9 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP39Q53GS9 AC087499.6-201ENST00000411576 835 ntBASIC16.54■□□□□ 0.24
USP39Q53GS9 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USP39Q53GS9 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.54■□□□□ 0.24
USP39Q53GS9 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.54■□□□□ 0.24
USP39Q53GS9 API5-211ENST00000534695 560 ntTSL 5 BASIC16.54■□□□□ 0.24
USP39Q53GS9 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.54■□□□□ 0.24
USP39Q53GS9 AC105021.1-202ENST00000570572 669 ntBASIC16.54■□□□□ 0.24
USP39Q53GS9 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.54■□□□□ 0.24
USP39Q53GS9 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USP39Q53GS9 AL844908.2-201ENST00000609461 460 ntBASIC16.54■□□□□ 0.24
USP39Q53GS9 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.54■□□□□ 0.24
USP39Q53GS9 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
USP39Q53GS9 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USP39Q53GS9 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USP39Q53GS9 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USP39Q53GS9 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
USP39Q53GS9 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
USP39Q53GS9 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USP39Q53GS9 FOXO1B-201ENST00000504678 1527 ntBASIC16.54■□□□□ 0.24
USP39Q53GS9 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.54■□□□□ 0.24
USP39Q53GS9 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USP39Q53GS9 RNF216P1-203ENST00000404404 2427 ntBASIC16.54■□□□□ 0.24
USP39Q53GS9 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
USP39Q53GS9 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP39Q53GS9 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 AL391825.1-201ENST00000457671 1364 ntBASIC16.53■□□□□ 0.24
USP39Q53GS9 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
USP39Q53GS9 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.53■□□□□ 0.24
USP39Q53GS9 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.53■□□□□ 0.24
USP39Q53GS9 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.53■□□□□ 0.24
USP39Q53GS9 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.53■□□□□ 0.24
USP39Q53GS9 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.53■□□□□ 0.24
USP39Q53GS9 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.53■□□□□ 0.24
USP39Q53GS9 RNA5SP410-201ENST00000516285 106 ntBASIC16.53■□□□□ 0.24
USP39Q53GS9 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.53■□□□□ 0.24
USP39Q53GS9 AC135586.1-201ENST00000539323 574 ntBASIC16.53■□□□□ 0.24
USP39Q53GS9 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.53■□□□□ 0.24
USP39Q53GS9 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.53■□□□□ 0.24
USP39Q53GS9 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.53■□□□□ 0.24
USP39Q53GS9 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.53■□□□□ 0.24
USP39Q53GS9 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.53■□□□□ 0.24
USP39Q53GS9 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.53■□□□□ 0.24
USP39Q53GS9 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.53■□□□□ 0.24
USP39Q53GS9 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.53■□□□□ 0.24
USP39Q53GS9 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms