Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 AC007967.4-201ENST00000614700 386 ntBASIC15.69■□□□□ 0.1
COL28A1Q2UY09 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 PCDH8P1-201ENST00000428983 2773 ntBASIC15.69■□□□□ 0.1
COL28A1Q2UY09 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 AP001094.4-201ENST00000579008 2176 ntBASIC15.68■□□□□ 0.1
COL28A1Q2UY09 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 AC135586.1-201ENST00000539323 574 ntBASIC15.68■□□□□ 0.1
COL28A1Q2UY09 SNX29P1-201ENST00000548357 1007 ntBASIC15.68■□□□□ 0.1
COL28A1Q2UY09 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
COL28A1Q2UY09 AC087499.5-201ENST00000452760 1342 ntBASIC15.68■□□□□ 0.1
COL28A1Q2UY09 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 AC103702.1-201ENST00000548801 2630 ntBASIC15.67■□□□□ 0.1
COL28A1Q2UY09 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL28A1Q2UY09 AC109635.5-201ENST00000533593 962 ntBASIC15.67■□□□□ 0.1
COL28A1Q2UY09 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms