Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NEK3P51956 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NEK3P51956 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NEK3P51956 PMS2P4-201ENST00000412466 1052 ntBASIC16.84■□□□□ 0.29
NEK3P51956 TFAMP1-201ENST00000412727 736 ntBASIC16.84■□□□□ 0.29
NEK3P51956 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
NEK3P51956 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
NEK3P51956 AL135744.1-201ENST00000565098 629 ntBASIC16.84■□□□□ 0.29
NEK3P51956 MIR4492-201ENST00000581627 80 ntBASIC16.84■□□□□ 0.29
NEK3P51956 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.84■□□□□ 0.29
NEK3P51956 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NEK3P51956 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
NEK3P51956 AKAP8P1-201ENST00000434743 1349 ntBASIC16.84■□□□□ 0.29
NEK3P51956 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
NEK3P51956 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
NEK3P51956 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NEK3P51956 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
NEK3P51956 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
NEK3P51956 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
NEK3P51956 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
NEK3P51956 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
NEK3P51956 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
NEK3P51956 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
NEK3P51956 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
NEK3P51956 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NEK3P51956 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
NEK3P51956 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NEK3P51956 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NEK3P51956 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
NEK3P51956 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
NEK3P51956 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.83■□□□□ 0.28
NEK3P51956 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
NEK3P51956 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
NEK3P51956 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NEK3P51956 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.83■□□□□ 0.28
NEK3P51956 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
NEK3P51956 AL596087.1-201ENST00000400979 1969 ntBASIC16.83■□□□□ 0.28
NEK3P51956 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NEK3P51956 AC092474.2-201ENST00000424288 719 ntBASIC16.83■□□□□ 0.28
NEK3P51956 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.83■□□□□ 0.28
NEK3P51956 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.83■□□□□ 0.28
NEK3P51956 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.83■□□□□ 0.28
NEK3P51956 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.83■□□□□ 0.28
NEK3P51956 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
NEK3P51956 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
NEK3P51956 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.83■□□□□ 0.28
NEK3P51956 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
NEK3P51956 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.83■□□□□ 0.28
NEK3P51956 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.83■□□□□ 0.28
NEK3P51956 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
NEK3P51956 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
NEK3P51956 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
NEK3P51956 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
NEK3P51956 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.83■□□□□ 0.28
NEK3P51956 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
NEK3P51956 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
NEK3P51956 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.82■□□□□ 0.28
NEK3P51956 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
NEK3P51956 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.82■□□□□ 0.28
NEK3P51956 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.82■□□□□ 0.28
NEK3P51956 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.82■□□□□ 0.28
NEK3P51956 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.82■□□□□ 0.28
NEK3P51956 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
NEK3P51956 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 KRT8P48-201ENST00000515599 1220 ntBASIC16.82■□□□□ 0.28
NEK3P51956 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
NEK3P51956 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.82■□□□□ 0.28
NEK3P51956 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.82■□□□□ 0.28
NEK3P51956 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.82■□□□□ 0.28
NEK3P51956 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.82■□□□□ 0.28
NEK3P51956 AC013467.2-201ENST00000605472 835 ntBASIC16.82■□□□□ 0.28
NEK3P51956 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.82■□□□□ 0.28
NEK3P51956 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.82■□□□□ 0.28
NEK3P51956 AL139011.1-202ENST00000642063 584 ntBASIC16.82■□□□□ 0.28
NEK3P51956 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
NEK3P51956 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 AL603832.2-201ENST00000566195 2125 ntBASIC16.82■□□□□ 0.28
NEK3P51956 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.82■□□□□ 0.28
NEK3P51956 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
NEK3P51956 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
NEK3P51956 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
NEK3P51956 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.82■□□□□ 0.28
NEK3P51956 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NEK3P51956 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.82■□□□□ 0.28
NEK3P51956 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms