Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL136038.3-201ENST00000561909 1096 ntBASIC13.63□□□□□ -0.23
HOXA1P49639 NTF6B-201ENST00000591913 560 ntBASIC13.63□□□□□ -0.23
HOXA1P49639 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC13.63□□□□□ -0.23
HOXA1P49639 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
HOXA1P49639 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC13.63□□□□□ -0.23
HOXA1P49639 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.63□□□□□ -0.23
HOXA1P49639 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
HOXA1P49639 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXA1P49639 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXA1P49639 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
HOXA1P49639 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.63□□□□□ -0.23
HOXA1P49639 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
HOXA1P49639 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC13.63□□□□□ -0.23
HOXA1P49639 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
HOXA1P49639 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
HOXA1P49639 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
HOXA1P49639 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 LINC00528-201ENST00000600723 2160 ntBASIC13.62□□□□□ -0.23
HOXA1P49639 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC13.62□□□□□ -0.23
HOXA1P49639 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXA1P49639 TP73-AS1-210ENST00000637775 1455 ntBASIC13.62□□□□□ -0.23
HOXA1P49639 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
HOXA1P49639 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXA1P49639 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
HOXA1P49639 OR2I1P-209ENST00000641730 5365 ntBASIC13.62□□□□□ -0.23
HOXA1P49639 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXA1P49639 AC211429.1-201ENST00000415277 523 ntBASIC13.62□□□□□ -0.23
HOXA1P49639 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC13.62□□□□□ -0.23
HOXA1P49639 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXA1P49639 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC13.62□□□□□ -0.23
HOXA1P49639 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXA1P49639 COX5A-202ENST00000562233 441 ntTSL 3 BASIC13.62□□□□□ -0.23
HOXA1P49639 COX5A-204ENST00000567270 579 ntTSL 3 BASIC13.62□□□□□ -0.23
HOXA1P49639 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC13.62□□□□□ -0.23
HOXA1P49639 Z69720.1-201ENST00000601483 472 ntBASIC13.62□□□□□ -0.23
HOXA1P49639 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXA1P49639 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
HOXA1P49639 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC13.62□□□□□ -0.23
HOXA1P49639 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXA1P49639 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXA1P49639 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC13.62□□□□□ -0.23
HOXA1P49639 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
HOXA1P49639 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC13.62□□□□□ -0.23
HOXA1P49639 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.62□□□□□ -0.23
HOXA1P49639 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXA1P49639 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.62□□□□□ -0.23
HOXA1P49639 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
HOXA1P49639 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXA1P49639 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXA1P49639 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
HOXA1P49639 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
HOXA1P49639 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
HOXA1P49639 AL671710.1-201ENST00000610245 2349 ntBASIC13.61□□□□□ -0.23
HOXA1P49639 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
HOXA1P49639 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 AL020989.1-201ENST00000422979 469 ntBASIC13.61□□□□□ -0.23
HOXA1P49639 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 DUX4L26-201ENST00000489078 1255 ntBASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms