Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CX3CR1P49238 AC068418.2-201ENST00000577309 3703 ntBASIC14.39□□□□□ -0.11
CX3CR1P49238 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CX3CR1P49238 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CX3CR1P49238 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC14.39□□□□□ -0.11
CX3CR1P49238 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CR1P49238 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
CX3CR1P49238 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CR1P49238 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CX3CR1P49238 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
CX3CR1P49238 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
CX3CR1P49238 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CR1P49238 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CR1P49238 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.38□□□□□ -0.11
CX3CR1P49238 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.38□□□□□ -0.11
CX3CR1P49238 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CR1P49238 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CR1P49238 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
CX3CR1P49238 MIR600HG-201ENST00000449175 5984 ntBASIC14.38□□□□□ -0.11
CX3CR1P49238 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.38□□□□□ -0.11
CX3CR1P49238 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CR1P49238 PMS2P4-201ENST00000412466 1052 ntBASIC14.38□□□□□ -0.11
CX3CR1P49238 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC14.38□□□□□ -0.11
CX3CR1P49238 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC14.38□□□□□ -0.11
CX3CR1P49238 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC14.38□□□□□ -0.11
CX3CR1P49238 SLC25A6P4-201ENST00000586535 553 ntBASIC14.38□□□□□ -0.11
CX3CR1P49238 AC010507.1-201ENST00000633895 436 ntBASIC14.38□□□□□ -0.11
CX3CR1P49238 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.38□□□□□ -0.11
CX3CR1P49238 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.38□□□□□ -0.11
CX3CR1P49238 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.38□□□□□ -0.11
CX3CR1P49238 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CX3CR1P49238 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CR1P49238 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CR1P49238 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CR1P49238 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CR1P49238 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.38□□□□□ -0.11
CX3CR1P49238 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CR1P49238 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CR1P49238 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CR1P49238 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.38□□□□□ -0.11
CX3CR1P49238 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC14.38□□□□□ -0.11
CX3CR1P49238 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CX3CR1P49238 AL603832.2-201ENST00000566195 2125 ntBASIC14.38□□□□□ -0.11
CX3CR1P49238 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CR1P49238 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CR1P49238 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.38□□□□□ -0.11
CX3CR1P49238 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CX3CR1P49238 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CX3CR1P49238 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CX3CR1P49238 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CX3CR1P49238 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC14.37□□□□□ -0.11
CX3CR1P49238 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CX3CR1P49238 TPM4P1-201ENST00000436100 807 ntBASIC14.37□□□□□ -0.11
CX3CR1P49238 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC14.37□□□□□ -0.11
CX3CR1P49238 HCG4B-203ENST00000450128 991 ntBASIC14.37□□□□□ -0.11
CX3CR1P49238 IGHV3-22-201ENST00000520721 359 ntBASIC14.37□□□□□ -0.11
CX3CR1P49238 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC14.37□□□□□ -0.11
CX3CR1P49238 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.37□□□□□ -0.11
CX3CR1P49238 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.37□□□□□ -0.11
CX3CR1P49238 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 PAUPAR-201ENST00000630360 2965 ntBASIC14.37□□□□□ -0.11
CX3CR1P49238 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CR1P49238 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CX3CR1P49238 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
CX3CR1P49238 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CX3CR1P49238 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.36□□□□□ -0.11
CX3CR1P49238 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CX3CR1P49238 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CX3CR1P49238 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CX3CR1P49238 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.36□□□□□ -0.11
CX3CR1P49238 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CX3CR1P49238 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CX3CR1P49238 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CX3CR1P49238 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CX3CR1P49238 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CX3CR1P49238 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC14.36□□□□□ -0.11
CX3CR1P49238 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CX3CR1P49238 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms