Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SOX2P48431 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
SOX2P48431 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX2P48431 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.41□□□□□ -0.1
SOX2P48431 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.41□□□□□ -0.1
SOX2P48431 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SOX2P48431 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.41□□□□□ -0.1
SOX2P48431 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.41□□□□□ -0.1
SOX2P48431 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.41□□□□□ -0.1
SOX2P48431 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
SOX2P48431 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.41□□□□□ -0.1
SOX2P48431 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SOX2P48431 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.41□□□□□ -0.1
SOX2P48431 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.41□□□□□ -0.1
SOX2P48431 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.41□□□□□ -0.1
SOX2P48431 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 RBM17P3-201ENST00000417687 1192 ntBASIC14.41□□□□□ -0.1
SOX2P48431 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC14.41□□□□□ -0.1
SOX2P48431 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SOX2P48431 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC14.41□□□□□ -0.1
SOX2P48431 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC14.41□□□□□ -0.1
SOX2P48431 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
SOX2P48431 MSRA-206ENST00000521209 814 ntTSL 3 BASIC14.41□□□□□ -0.1
SOX2P48431 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
SOX2P48431 AC087641.1-201ENST00000557561 1021 ntBASIC14.41□□□□□ -0.1
SOX2P48431 RNF151-202ENST00000569210 853 ntTSL 2 BASIC14.41□□□□□ -0.1
SOX2P48431 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC14.41□□□□□ -0.1
SOX2P48431 AC004706.3-202ENST00000621574 984 ntBASIC14.41□□□□□ -0.1
SOX2P48431 AP001350.2-201ENST00000625104 1094 ntBASIC14.41□□□□□ -0.1
SOX2P48431 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 AL353732.1-201ENST00000569618 1459 ntBASIC14.41□□□□□ -0.1
SOX2P48431 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
SOX2P48431 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.41□□□□□ -0.1
SOX2P48431 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.41□□□□□ -0.1
SOX2P48431 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
SOX2P48431 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.1
SOX2P48431 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 AC069224.1-201ENST00000566372 1715 ntBASIC14.41□□□□□ -0.1
SOX2P48431 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC14.41□□□□□ -0.1
SOX2P48431 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX2P48431 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX2P48431 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX2P48431 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.4□□□□□ -0.1
SOX2P48431 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SOX2P48431 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
SOX2P48431 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
SOX2P48431 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX2P48431 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX2P48431 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX2P48431 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX2P48431 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX2P48431 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX2P48431 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX2P48431 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.4□□□□□ -0.1
SOX2P48431 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX2P48431 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX2P48431 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX2P48431 MYO15B-237ENST00000642007 4893 ntBASIC14.4□□□□□ -0.1
SOX2P48431 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX2P48431 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX2P48431 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX2P48431 EMD-201ENST00000369835 966 ntTSL 3 BASIC14.4□□□□□ -0.1
SOX2P48431 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC14.4□□□□□ -0.1
SOX2P48431 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SOX2P48431 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX2P48431 ATP5G2P1-201ENST00000433580 426 ntBASIC14.4□□□□□ -0.1
SOX2P48431 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC14.4□□□□□ -0.1
SOX2P48431 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX2P48431 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX2P48431 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC14.4□□□□□ -0.1
SOX2P48431 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC14.4□□□□□ -0.1
SOX2P48431 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX2P48431 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX2P48431 MTDHP4-201ENST00000600287 670 ntBASIC14.4□□□□□ -0.1
SOX2P48431 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
SOX2P48431 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC14.4□□□□□ -0.1
SOX2P48431 AL358472.4-201ENST00000633140 710 ntBASIC14.4□□□□□ -0.1
SOX2P48431 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms