Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
RFX3P48380 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.39■□□□□ 0.05
RFX3P48380 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.39■□□□□ 0.05
RFX3P48380 RNU1-129P-201ENST00000384064 167 ntBASIC15.39■□□□□ 0.05
RFX3P48380 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.39■□□□□ 0.05
RFX3P48380 RHOQP3-201ENST00000437982 621 ntBASIC15.39■□□□□ 0.05
RFX3P48380 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.39■□□□□ 0.05
RFX3P48380 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
RFX3P48380 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.39■□□□□ 0.05
RFX3P48380 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.39■□□□□ 0.05
RFX3P48380 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.39■□□□□ 0.05
RFX3P48380 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.39■□□□□ 0.05
RFX3P48380 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.39■□□□□ 0.05
RFX3P48380 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 KRT19P2-202ENST00000557173 1012 ntBASIC15.39■□□□□ 0.05
RFX3P48380 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
RFX3P48380 U1.21-201ENST00000580816 167 ntBASIC15.39■□□□□ 0.05
RFX3P48380 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.39■□□□□ 0.05
RFX3P48380 GGT4P-201ENST00000623672 1708 ntBASIC15.39■□□□□ 0.05
RFX3P48380 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.39■□□□□ 0.05
RFX3P48380 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 MST1L-201ENST00000442552 2185 ntBASIC15.39■□□□□ 0.05
RFX3P48380 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 GPAA1P2-202ENST00000606848 1787 ntBASIC15.39■□□□□ 0.05
RFX3P48380 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
RFX3P48380 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
RFX3P48380 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
RFX3P48380 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
RFX3P48380 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.39■□□□□ 0.05
RFX3P48380 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFX3P48380 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
RFX3P48380 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
RFX3P48380 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.38■□□□□ 0.05
RFX3P48380 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
RFX3P48380 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.38■□□□□ 0.05
RFX3P48380 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 GGT3P-204ENST00000453783 1664 ntBASIC15.38■□□□□ 0.05
RFX3P48380 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.38■□□□□ 0.05
RFX3P48380 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.38■□□□□ 0.05
RFX3P48380 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
RFX3P48380 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
RFX3P48380 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
RFX3P48380 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.38■□□□□ 0.05
RFX3P48380 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.38■□□□□ 0.05
RFX3P48380 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.38■□□□□ 0.05
RFX3P48380 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.38■□□□□ 0.05
RFX3P48380 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
RFX3P48380 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.38■□□□□ 0.05
RFX3P48380 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.38■□□□□ 0.05
RFX3P48380 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.38■□□□□ 0.05
RFX3P48380 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
RFX3P48380 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
RFX3P48380 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.38■□□□□ 0.05
RFX3P48380 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
RFX3P48380 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
RFX3P48380 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RFX3P48380 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
RFX3P48380 PCGF3-213ENST00000620529 1899 ntBASIC15.37■□□□□ 0.05
RFX3P48380 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.37■□□□□ 0.05
RFX3P48380 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
RFX3P48380 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
RFX3P48380 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
RFX3P48380 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms