Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 AC129492.6-201ENST00000611383 1305 ntBASIC12.49□□□□□ -0.41
HLA-DMBP28068 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 RPL13AP23-201ENST00000480739 586 ntBASIC12.49□□□□□ -0.41
HLA-DMBP28068 AC092910.1-201ENST00000482027 1129 ntBASIC12.49□□□□□ -0.41
HLA-DMBP28068 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 IGHV3-65-201ENST00000523210 341 ntBASIC12.49□□□□□ -0.41
HLA-DMBP28068 SLC25A1P1-201ENST00000528351 927 ntBASIC12.49□□□□□ -0.41
HLA-DMBP28068 MMP17-203ENST00000535004 719 ntTSL 3 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 AC005412.3-201ENST00000580309 715 ntBASIC12.49□□□□□ -0.41
HLA-DMBP28068 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 AL356488.2-201ENST00000602755 427 ntBASIC12.49□□□□□ -0.41
HLA-DMBP28068 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 MIR1199-201ENST00000621445 119 ntBASIC12.49□□□□□ -0.41
HLA-DMBP28068 NORAD-201ENST00000565493 5339 ntBASIC12.49□□□□□ -0.41
HLA-DMBP28068 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 BANP-201ENST00000286122 2368 ntTSL 5 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 AC068418.2-201ENST00000577309 3703 ntBASIC12.49□□□□□ -0.41
HLA-DMBP28068 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 AC144831.1-201ENST00000573312 2656 ntBASIC12.48□□□□□ -0.41
HLA-DMBP28068 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 AC103702.1-201ENST00000548801 2630 ntBASIC12.48□□□□□ -0.41
HLA-DMBP28068 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 ZNF259P1-201ENST00000407656 1365 ntBASIC12.48□□□□□ -0.41
HLA-DMBP28068 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 POU5F1P6-201ENST00000466990 990 ntBASIC12.48□□□□□ -0.41
HLA-DMBP28068 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 AC105339.3-201ENST00000560043 636 ntBASIC12.48□□□□□ -0.41
HLA-DMBP28068 OR7E47P-204ENST00000575924 449 ntBASIC12.48□□□□□ -0.41
HLA-DMBP28068 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 AC008735.5-201ENST00000623544 497 ntBASIC12.48□□□□□ -0.41
HLA-DMBP28068 AC004790.2-201ENST00000623588 572 ntBASIC12.48□□□□□ -0.41
HLA-DMBP28068 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC12.48□□□□□ -0.41
HLA-DMBP28068 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
HLA-DMBP28068 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DMBP28068 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DMBP28068 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DMBP28068 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DMBP28068 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DMBP28068 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DMBP28068 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DMBP28068 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DMBP28068 VILL-207ENST00000465644 1857 ntTSL 5 BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms