Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB1P09429 ACE-203ENST00000413513 2237 ntTSL 2 BASIC19.21■□□□□ 0.67
HMGB1P09429 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB1P09429 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB1P09429 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC19.21■□□□□ 0.67
HMGB1P09429 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB1P09429 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
HMGB1P09429 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB1P09429 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC19.21■□□□□ 0.67
HMGB1P09429 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC19.21■□□□□ 0.67
HMGB1P09429 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB1P09429 GPX1P2-201ENST00000429271 606 ntBASIC19.21■□□□□ 0.67
HMGB1P09429 SPCS2P4-201ENST00000436160 681 ntBASIC19.21■□□□□ 0.67
HMGB1P09429 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.21■□□□□ 0.67
HMGB1P09429 KRT8P48-201ENST00000515599 1220 ntBASIC19.21■□□□□ 0.67
HMGB1P09429 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.21■□□□□ 0.67
HMGB1P09429 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC19.21■□□□□ 0.67
HMGB1P09429 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC19.21■□□□□ 0.67
HMGB1P09429 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.21■□□□□ 0.67
HMGB1P09429 AC005829.1-201ENST00000570002 483 ntBASIC19.21■□□□□ 0.67
HMGB1P09429 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.21■□□□□ 0.67
HMGB1P09429 AC007950.2-201ENST00000615045 2347 ntBASIC19.21■□□□□ 0.67
HMGB1P09429 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
HMGB1P09429 ELL2P1-201ENST00000413990 1906 ntBASIC19.21■□□□□ 0.67
HMGB1P09429 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB1P09429 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
HMGB1P09429 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB1P09429 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB1P09429 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC19.21■□□□□ 0.67
HMGB1P09429 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB1P09429 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB1P09429 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC19.21■□□□□ 0.67
HMGB1P09429 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
HMGB1P09429 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
HMGB1P09429 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
HMGB1P09429 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC19.2■□□□□ 0.66
HMGB1P09429 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
HMGB1P09429 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC19.2■□□□□ 0.66
HMGB1P09429 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
HMGB1P09429 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC19.2■□□□□ 0.66
HMGB1P09429 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
HMGB1P09429 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
HMGB1P09429 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC19.2■□□□□ 0.66
HMGB1P09429 COX10-202ENST00000429152 875 ntTSL 2 BASIC19.2■□□□□ 0.66
HMGB1P09429 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC19.2■□□□□ 0.66
HMGB1P09429 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC19.2■□□□□ 0.66
HMGB1P09429 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.2■□□□□ 0.66
HMGB1P09429 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC19.2■□□□□ 0.66
HMGB1P09429 IGHV3-62-201ENST00000520057 340 ntBASIC19.2■□□□□ 0.66
HMGB1P09429 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC19.2■□□□□ 0.66
HMGB1P09429 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC19.2■□□□□ 0.66
HMGB1P09429 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC19.2■□□□□ 0.66
HMGB1P09429 AP000842.3-202ENST00000569238 1080 ntBASIC19.2■□□□□ 0.66
HMGB1P09429 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC19.2■□□□□ 0.66
HMGB1P09429 SSH2-211ENST00000590153 570 ntTSL 4 BASIC19.2■□□□□ 0.66
HMGB1P09429 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
HMGB1P09429 AC084121.4-201ENST00000641598 221 ntBASIC19.2■□□□□ 0.66
HMGB1P09429 AF228730.8-201ENST00000642140 221 ntBASIC19.2■□□□□ 0.66
HMGB1P09429 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC19.2■□□□□ 0.66
HMGB1P09429 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 AC008894.3-201ENST00000624324 3103 ntBASIC19.2■□□□□ 0.66
HMGB1P09429 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
HMGB1P09429 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
HMGB1P09429 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB1P09429 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB1P09429 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGB1P09429 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.19■□□□□ 0.66
HMGB1P09429 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB1P09429 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB1P09429 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB1P09429 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB1P09429 FAM220BP-201ENST00000377689 816 ntBASIC19.19■□□□□ 0.66
HMGB1P09429 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGB1P09429 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC19.19■□□□□ 0.66
HMGB1P09429 ALG1L5P-201ENST00000482043 771 ntBASIC19.19■□□□□ 0.66
HMGB1P09429 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC19.19■□□□□ 0.66
HMGB1P09429 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC19.19■□□□□ 0.66
HMGB1P09429 AC061975.2-201ENST00000581722 295 ntBASIC19.19■□□□□ 0.66
HMGB1P09429 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC19.19■□□□□ 0.66
HMGB1P09429 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms