Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 CD9-202ENST00000382515 1229 ntTSL 5 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 YBX1P2-201ENST00000489612 999 ntBASIC11.98□□□□□ -0.49
SMKR1H3BMG3 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 AL353801.3-201ENST00000609898 542 ntBASIC11.98□□□□□ -0.49
SMKR1H3BMG3 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC11.98□□□□□ -0.49
SMKR1H3BMG3 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 MECR-202ENST00000373791 2416 ntTSL 2 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 KRT8P39-201ENST00000396270 1433 ntBASIC11.97□□□□□ -0.49
SMKR1H3BMG3 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 LINC00982-205ENST00000420957 435 ntBASIC11.97□□□□□ -0.49
SMKR1H3BMG3 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 DENND3-207ENST00000518347 850 ntTSL 2 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 IGHV3-41-201ENST00000613121 348 ntBASIC11.97□□□□□ -0.49
SMKR1H3BMG3 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
SMKR1H3BMG3 GPAA1P2-202ENST00000606848 1787 ntBASIC11.97□□□□□ -0.49
SMKR1H3BMG3 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC11.97□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms