Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 MPV17-206ENST00000402722 827 ntTSL 3 BASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 FADS2-205ENST00000517839 469 ntTSL 3 BASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 RN7SL190P-201ENST00000582519 257 ntBASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 APRT-204ENST00000563655 709 ntTSL 5 BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 AC093525.8-201ENST00000624099 1342 ntBASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC30.67■■■□□ 2.5
SHROOM4Q9ULL8 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 AC074044.1-201ENST00000609673 707 ntBASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC30.66■■■□□ 2.5
SHROOM4Q9ULL8 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 PAM16-204ENST00000571941 674 ntTSL 3 BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 AL033527.5-201ENST00000641382 801 ntBASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC30.65■■■□□ 2.5
SHROOM4Q9ULL8 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SHROOM4Q9ULL8 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SHROOM4Q9ULL8 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SHROOM4Q9ULL8 LBX2-201ENST00000341396 886 ntTSL 3 BASIC30.64■■■□□ 2.5
SHROOM4Q9ULL8 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC30.64■■■□□ 2.5
SHROOM4Q9ULL8 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC30.64■■■□□ 2.5
SHROOM4Q9ULL8 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC30.64■■■□□ 2.5
SHROOM4Q9ULL8 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC30.64■■■□□ 2.5
SHROOM4Q9ULL8 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SHROOM4Q9ULL8 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SHROOM4Q9ULL8 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SHROOM4Q9ULL8 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC30.64■■■□□ 2.5
SHROOM4Q9ULL8 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC30.64■■■□□ 2.49
SHROOM4Q9ULL8 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC30.64■■■□□ 2.49
SHROOM4Q9ULL8 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC30.64■■■□□ 2.49
SHROOM4Q9ULL8 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC30.64■■■□□ 2.49
SHROOM4Q9ULL8 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC30.64■■■□□ 2.49
SHROOM4Q9ULL8 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 AC106872.11-201ENST00000605838 421 ntBASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 PPA1-206ENST00000625364 644 ntTSL 5 BASIC30.63■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms