Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 SPTSSB-204ENST00000617024 1292 ntBASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 UXT-AS1-201ENST00000590504 1525 ntBASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 MIR346-201ENST00000362234 95 ntBASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 PTMS-202ENST00000389462 773 ntTSL 2 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 AC004461.1-201ENST00000412461 403 ntBASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 AC211486.1-202ENST00000416371 468 ntBASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 AC098859.1-201ENST00000502915 1238 ntBASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 AC211476.1-201ENST00000503899 468 ntBASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 CCND1-203ENST00000536559 553 ntTSL 3 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 SSH2-211ENST00000590153 570 ntTSL 4 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC20.92■□□□□ 0.94
SMC4Q9NTJ3 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 SLC25A39P2-201ENST00000537614 270 ntBASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 KRT8P23-201ENST00000560090 1207 ntBASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 AC023511.2-201ENST00000618803 211 ntBASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 AC055717.3-201ENST00000622967 595 ntBASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMC4Q9NTJ3 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms