Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 AC073389.1-201ENST00000595595 795 ntBASIC15.61■□□□□ 0.09
BRF2Q9HAW0 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.61■□□□□ 0.09
BRF2Q9HAW0 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.61■□□□□ 0.09
BRF2Q9HAW0 AC099522.2-201ENST00000607001 744 ntBASIC15.61■□□□□ 0.09
BRF2Q9HAW0 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.61■□□□□ 0.09
BRF2Q9HAW0 AC092865.6-201ENST00000642101 219 ntBASIC15.61■□□□□ 0.09
BRF2Q9HAW0 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BRF2Q9HAW0 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
BRF2Q9HAW0 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.61■□□□□ 0.09
BRF2Q9HAW0 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
BRF2Q9HAW0 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.61■□□□□ 0.09
BRF2Q9HAW0 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
BRF2Q9HAW0 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
BRF2Q9HAW0 AKAP8P1-201ENST00000434743 1349 ntBASIC15.61■□□□□ 0.09
BRF2Q9HAW0 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
BRF2Q9HAW0 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BRF2Q9HAW0 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BRF2Q9HAW0 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
BRF2Q9HAW0 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BRF2Q9HAW0 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
BRF2Q9HAW0 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.6■□□□□ 0.09
BRF2Q9HAW0 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 AC105917.1-201ENST00000506637 2539 ntBASIC15.59■□□□□ 0.09
BRF2Q9HAW0 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 AC026396.1-201ENST00000419388 421 ntBASIC15.59■□□□□ 0.09
BRF2Q9HAW0 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 AC046158.3-201ENST00000624947 2558 ntBASIC15.59■□□□□ 0.09
BRF2Q9HAW0 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
BRF2Q9HAW0 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
BRF2Q9HAW0 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
BRF2Q9HAW0 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
BRF2Q9HAW0 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
BRF2Q9HAW0 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
BRF2Q9HAW0 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.58■□□□□ 0.08
BRF2Q9HAW0 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
BRF2Q9HAW0 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
BRF2Q9HAW0 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms