Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 PRSS29P-201ENST00000440800 595 ntBASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 RN7SL510P-201ENST00000581311 263 ntBASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATG4AQ8WYN0 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 AC092919.2-201ENST00000623631 1645 ntBASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 U82695.1-201ENST00000635752 1889 ntBASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 AL031432.2-201ENST00000566714 459 ntBASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 AL928711.1-201ENST00000570165 459 ntBASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.93■□□□□ 0.3
ATG4AQ8WYN0 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms