Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 CD99-202ENST00000381180 530 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 PRSS29P-201ENST00000440800 595 ntBASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 FAM185BP-201ENST00000443595 716 ntBASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 AF186996.4-201ENST00000467186 377 ntBASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 TOLLIP-AS1-201ENST00000530897 939 ntBASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 PAM16-208ENST00000573553 722 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 U82695.1-201ENST00000635752 1889 ntBASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 AL592424.1-201ENST00000563624 1536 ntBASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 TP73-AS1-207ENST00000624167 988 ntBASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC54Q8NEL0 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms