Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 BUB3-202ENST00000368859 667 ntTSL 3 BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 NUDT16P1-203ENST00000513809 620 ntBASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 AC124947.2-201ENST00000547118 1133 ntBASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 SLC25A1P4-201ENST00000567977 778 ntBASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 DGCR10-201ENST00000609839 495 ntBASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 AL049637.2-201ENST00000641778 930 ntBASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC28AQ8IWP9 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC28AQ8IWP9 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC13.71□□□□□ -0.22
CCDC28AQ8IWP9 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC13.71□□□□□ -0.22
CCDC28AQ8IWP9 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
CCDC28AQ8IWP9 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC28AQ8IWP9 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC28AQ8IWP9 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC28AQ8IWP9 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
CCDC28AQ8IWP9 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.71□□□□□ -0.22
CCDC28AQ8IWP9 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC28AQ8IWP9 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 AL391256.1-201ENST00000443260 1855 ntBASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 AC233702.5-201ENST00000584107 538 ntBASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 AP000692.2-201ENST00000608391 879 ntBASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 KRT8P7-201ENST00000533003 1432 ntBASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CCDC28AQ8IWP9 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 LINC01230-201ENST00000625222 3017 ntBASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC13.69□□□□□ -0.22
CCDC28AQ8IWP9 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms