Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 AC097493.3-201ENST00000509725 367 ntBASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 AC069120.2-201ENST00000524091 540 ntBASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 MIR3909-201ENST00000579518 119 ntBASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 AC016027.1-202ENST00000607927 1699 ntBASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC144BQ3MJ40 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 COPE-202ENST00000349893 948 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC144BQ3MJ40 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 AC244107.1-201ENST00000442033 332 ntBASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 LINC02560-201ENST00000596379 459 ntBASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 AC131009.4-201ENST00000624048 1740 ntBASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 FRMD8P1-201ENST00000440433 1524 ntBASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC144BQ3MJ40 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms