Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 ACTBP11-201ENST00000436287 1126 ntBASIC15.71■□□□□ 0.11
COL28A1Q2UY09 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 TPI1-206ENST00000488464 791 ntTSL 5 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 CD74-212ENST00000524315 584 ntTSL 5 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 MIR6775-201ENST00000617557 69 ntBASIC15.71■□□□□ 0.11
COL28A1Q2UY09 AC004840.1-201ENST00000636359 365 ntBASIC15.71■□□□□ 0.11
COL28A1Q2UY09 AL109936.8-201ENST00000641772 604 ntBASIC15.71■□□□□ 0.11
COL28A1Q2UY09 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 AL391825.1-201ENST00000457671 1364 ntBASIC15.71■□□□□ 0.11
COL28A1Q2UY09 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
COL28A1Q2UY09 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
COL28A1Q2UY09 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 BNIP3P42-201ENST00000454982 569 ntBASIC15.7■□□□□ 0.1
COL28A1Q2UY09 RN7SL837P-201ENST00000463010 287 ntBASIC15.7■□□□□ 0.1
COL28A1Q2UY09 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 BNIP3P29-201ENST00000598302 571 ntBASIC15.7■□□□□ 0.1
COL28A1Q2UY09 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 CHCHD2P3-201ENST00000603038 451 ntBASIC15.7■□□□□ 0.1
COL28A1Q2UY09 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 AC011447.5-201ENST00000616168 564 ntBASIC15.7■□□□□ 0.1
COL28A1Q2UY09 RAB34-223ENST00000636154 730 ntTSL 2 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.7■□□□□ 0.1
COL28A1Q2UY09 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL28A1Q2UY09 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 LINC02012-201ENST00000608206 1725 ntBASIC15.69■□□□□ 0.1
COL28A1Q2UY09 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.69■□□□□ 0.1
COL28A1Q2UY09 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms