Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 MIR600HG-201ENST00000449175 5984 ntBASIC18.91■□□□□ 0.62
SF3A1Q15459 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.91■□□□□ 0.62
SF3A1Q15459 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.91■□□□□ 0.62
SF3A1Q15459 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SF3A1Q15459 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.91■□□□□ 0.62
SF3A1Q15459 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.91■□□□□ 0.62
SF3A1Q15459 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.91■□□□□ 0.62
SF3A1Q15459 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
SF3A1Q15459 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.91■□□□□ 0.62
SF3A1Q15459 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.91■□□□□ 0.62
SF3A1Q15459 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.91■□□□□ 0.62
SF3A1Q15459 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.91■□□□□ 0.62
SF3A1Q15459 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 HLA-A-201ENST00000376802 1334 ntBASIC18.91■□□□□ 0.62
SF3A1Q15459 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.91■□□□□ 0.62
SF3A1Q15459 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.91■□□□□ 0.62
SF3A1Q15459 AC010491.1-201ENST00000563101 2797 ntBASIC18.91■□□□□ 0.62
SF3A1Q15459 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
SF3A1Q15459 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SF3A1Q15459 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SF3A1Q15459 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SF3A1Q15459 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SF3A1Q15459 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.9■□□□□ 0.62
SF3A1Q15459 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SF3A1Q15459 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.9■□□□□ 0.62
SF3A1Q15459 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SF3A1Q15459 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
SF3A1Q15459 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SF3A1Q15459 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.9■□□□□ 0.62
SF3A1Q15459 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SF3A1Q15459 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SF3A1Q15459 RNU1-129P-201ENST00000384064 167 ntBASIC18.9■□□□□ 0.62
SF3A1Q15459 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.9■□□□□ 0.62
SF3A1Q15459 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
SF3A1Q15459 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SF3A1Q15459 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
SF3A1Q15459 AL513480.1-201ENST00000451731 511 ntBASIC18.9■□□□□ 0.62
SF3A1Q15459 AC093909.1-201ENST00000504731 1122 ntBASIC18.9■□□□□ 0.62
SF3A1Q15459 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
SF3A1Q15459 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SF3A1Q15459 AL603832.2-201ENST00000566195 2125 ntBASIC18.9■□□□□ 0.62
SF3A1Q15459 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SF3A1Q15459 U1.21-201ENST00000580816 167 ntBASIC18.9■□□□□ 0.62
SF3A1Q15459 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.9■□□□□ 0.62
SF3A1Q15459 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.9■□□□□ 0.62
SF3A1Q15459 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.9■□□□□ 0.62
SF3A1Q15459 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SF3A1Q15459 MYB-242ENST00000618728 3545 ntTSL 5 BASIC18.9■□□□□ 0.62
SF3A1Q15459 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SF3A1Q15459 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.9■□□□□ 0.62
SF3A1Q15459 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SF3A1Q15459 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SF3A1Q15459 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
SF3A1Q15459 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SF3A1Q15459 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SF3A1Q15459 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.9■□□□□ 0.62
SF3A1Q15459 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
SF3A1Q15459 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SF3A1Q15459 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
SF3A1Q15459 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SF3A1Q15459 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SF3A1Q15459 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
SF3A1Q15459 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
SF3A1Q15459 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SF3A1Q15459 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC18.89■□□□□ 0.61
SF3A1Q15459 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SF3A1Q15459 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.89■□□□□ 0.61
SF3A1Q15459 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SF3A1Q15459 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.89■□□□□ 0.61
SF3A1Q15459 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SF3A1Q15459 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.89■□□□□ 0.61
SF3A1Q15459 CRYGEP-201ENST00000412192 528 ntBASIC18.89■□□□□ 0.61
SF3A1Q15459 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SF3A1Q15459 HCG4B-203ENST00000450128 991 ntBASIC18.89■□□□□ 0.61
SF3A1Q15459 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SF3A1Q15459 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SF3A1Q15459 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SF3A1Q15459 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.89■□□□□ 0.61
SF3A1Q15459 NID2-208ENST00000617139 3827 ntTSL 5 BASIC18.89■□□□□ 0.61
SF3A1Q15459 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.89■□□□□ 0.61
SF3A1Q15459 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SF3A1Q15459 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SF3A1Q15459 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SF3A1Q15459 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SF3A1Q15459 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms