Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 MIR4649-201ENST00000582839 64 ntBASIC11.5□□□□□ -0.57
PRKDCP78527 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC11.5□□□□□ -0.57
PRKDCP78527 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC11.5□□□□□ -0.57
PRKDCP78527 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC11.49□□□□□ -0.57
PRKDCP78527 PCDHB17P-201ENST00000539533 2393 ntBASIC11.49□□□□□ -0.57
PRKDCP78527 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC11.49□□□□□ -0.57
PRKDCP78527 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC11.49□□□□□ -0.57
PRKDCP78527 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
PRKDCP78527 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 TISP43-201ENST00000409793 538 ntTSL 4 BASIC11.49□□□□□ -0.57
PRKDCP78527 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC11.49□□□□□ -0.57
PRKDCP78527 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC11.49□□□□□ -0.57
PRKDCP78527 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 RNA5SP486-201ENST00000515961 83 ntBASIC11.49□□□□□ -0.57
PRKDCP78527 IGHV3-37-201ENST00000518544 340 ntBASIC11.49□□□□□ -0.57
PRKDCP78527 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC11.49□□□□□ -0.57
PRKDCP78527 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC11.49□□□□□ -0.57
PRKDCP78527 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC11.49□□□□□ -0.57
PRKDCP78527 RPL17P45-201ENST00000586289 509 ntBASIC11.49□□□□□ -0.57
PRKDCP78527 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC11.49□□□□□ -0.57
PRKDCP78527 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC11.49□□□□□ -0.57
PRKDCP78527 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC11.49□□□□□ -0.57
PRKDCP78527 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
PRKDCP78527 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC11.49□□□□□ -0.57
PRKDCP78527 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC11.49□□□□□ -0.57
PRKDCP78527 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
PRKDCP78527 MIR6842-201ENST00000612539 65 ntBASIC11.49□□□□□ -0.57
PRKDCP78527 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC11.49□□□□□ -0.57
PRKDCP78527 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC11.49□□□□□ -0.57
PRKDCP78527 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC11.49□□□□□ -0.57
PRKDCP78527 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC11.49□□□□□ -0.57
PRKDCP78527 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC11.49□□□□□ -0.57
PRKDCP78527 RAC2-202ENST00000401529 569 ntTSL 4 BASIC11.49□□□□□ -0.57
PRKDCP78527 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC11.49□□□□□ -0.57
PRKDCP78527 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC11.49□□□□□ -0.57
PRKDCP78527 AC010234.1-201ENST00000494599 870 ntBASIC11.49□□□□□ -0.57
PRKDCP78527 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC11.49□□□□□ -0.57
PRKDCP78527 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC11.49□□□□□ -0.57
PRKDCP78527 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC11.49□□□□□ -0.57
PRKDCP78527 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC11.49□□□□□ -0.57
PRKDCP78527 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
PRKDCP78527 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC11.49□□□□□ -0.57
PRKDCP78527 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
PRKDCP78527 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC11.48□□□□□ -0.57
PRKDCP78527 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
PRKDCP78527 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC11.48□□□□□ -0.57
PRKDCP78527 DDX39AP1-201ENST00000445147 1181 ntBASIC11.48□□□□□ -0.57
PRKDCP78527 AC019193.1-201ENST00000506678 823 ntBASIC11.48□□□□□ -0.57
PRKDCP78527 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC11.48□□□□□ -0.57
PRKDCP78527 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
PRKDCP78527 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
PRKDCP78527 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC11.48□□□□□ -0.57
PRKDCP78527 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC11.48□□□□□ -0.57
PRKDCP78527 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
PRKDCP78527 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC11.48□□□□□ -0.57
PRKDCP78527 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC11.48□□□□□ -0.57
PRKDCP78527 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC11.48□□□□□ -0.57
PRKDCP78527 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC11.48□□□□□ -0.57
PRKDCP78527 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC11.48□□□□□ -0.57
PRKDCP78527 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC11.48□□□□□ -0.57
PRKDCP78527 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC11.48□□□□□ -0.57
PRKDCP78527 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
PRKDCP78527 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC11.48□□□□□ -0.57
PRKDCP78527 AC025271.4-201ENST00000621477 1726 ntBASIC11.48□□□□□ -0.57
PRKDCP78527 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC11.48□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms