Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC13.31□□□□□ -0.28
LMO4P61968 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC13.3□□□□□ -0.28
LMO4P61968 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC13.3□□□□□ -0.28
LMO4P61968 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC13.3□□□□□ -0.28
LMO4P61968 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC13.3□□□□□ -0.28
LMO4P61968 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
LMO4P61968 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC13.3□□□□□ -0.28
LMO4P61968 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC13.3□□□□□ -0.28
LMO4P61968 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC13.3□□□□□ -0.28
LMO4P61968 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
LMO4P61968 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
LMO4P61968 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
LMO4P61968 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
LMO4P61968 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
LMO4P61968 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
LMO4P61968 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC13.3□□□□□ -0.28
LMO4P61968 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC13.3□□□□□ -0.28
LMO4P61968 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC13.3□□□□□ -0.28
LMO4P61968 EEF1DP4-201ENST00000446006 880 ntBASIC13.3□□□□□ -0.28
LMO4P61968 KRT17P7-201ENST00000451704 1104 ntBASIC13.3□□□□□ -0.28
LMO4P61968 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC13.3□□□□□ -0.28
LMO4P61968 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC13.3□□□□□ -0.28
LMO4P61968 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC13.3□□□□□ -0.28
LMO4P61968 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC13.3□□□□□ -0.28
LMO4P61968 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC13.3□□□□□ -0.28
LMO4P61968 AC243562.2-201ENST00000561247 970 ntBASIC13.3□□□□□ -0.28
LMO4P61968 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC13.3□□□□□ -0.28
LMO4P61968 AC099568.2-201ENST00000609194 695 ntBASIC13.3□□□□□ -0.28
LMO4P61968 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
LMO4P61968 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC13.3□□□□□ -0.28
LMO4P61968 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC13.3□□□□□ -0.28
LMO4P61968 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC13.3□□□□□ -0.28
LMO4P61968 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC13.3□□□□□ -0.28
LMO4P61968 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC13.3□□□□□ -0.28
LMO4P61968 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC13.3□□□□□ -0.28
LMO4P61968 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
LMO4P61968 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC13.3□□□□□ -0.28
LMO4P61968 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LMO4P61968 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LMO4P61968 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LMO4P61968 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC13.29□□□□□ -0.28
LMO4P61968 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
LMO4P61968 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
LMO4P61968 ME2P1-201ENST00000426028 1970 ntBASIC13.29□□□□□ -0.28
LMO4P61968 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LMO4P61968 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC13.29□□□□□ -0.28
LMO4P61968 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC13.29□□□□□ -0.28
LMO4P61968 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
LMO4P61968 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
LMO4P61968 FLJ38576-201ENST00000623820 2459 ntBASIC13.29□□□□□ -0.28
LMO4P61968 AC005052.1-201ENST00000625181 2492 ntBASIC13.29□□□□□ -0.28
LMO4P61968 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LMO4P61968 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
LMO4P61968 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LMO4P61968 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
LMO4P61968 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC13.29□□□□□ -0.28
LMO4P61968 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC13.29□□□□□ -0.28
LMO4P61968 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
LMO4P61968 AP006294.1-201ENST00000415407 339 ntBASIC13.29□□□□□ -0.28
LMO4P61968 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LMO4P61968 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
LMO4P61968 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC13.29□□□□□ -0.28
LMO4P61968 TIMM17BP1-201ENST00000545713 516 ntBASIC13.29□□□□□ -0.28
LMO4P61968 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC13.29□□□□□ -0.28
LMO4P61968 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.29□□□□□ -0.28
LMO4P61968 AC007431.3-201ENST00000623221 587 ntBASIC13.29□□□□□ -0.28
LMO4P61968 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
LMO4P61968 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LMO4P61968 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
LMO4P61968 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LMO4P61968 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LMO4P61968 AC092171.3-201ENST00000610122 2651 ntBASIC13.29□□□□□ -0.28
LMO4P61968 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LMO4P61968 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LMO4P61968 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LMO4P61968 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
LMO4P61968 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms