Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MRE11P49959 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
MRE11P49959 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
MRE11P49959 AC136621.1-201ENST00000624017 2304 ntBASIC19.11■□□□□ 0.65
MRE11P49959 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.11■□□□□ 0.65
MRE11P49959 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
MRE11P49959 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
MRE11P49959 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MRE11P49959 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MRE11P49959 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
MRE11P49959 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MRE11P49959 PGR-210ENST00000619228 3038 ntTSL 5 BASIC19.11■□□□□ 0.65
MRE11P49959 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MRE11P49959 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MRE11P49959 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MRE11P49959 RPSAP43-201ENST00000402237 625 ntBASIC19.11■□□□□ 0.65
MRE11P49959 AC004967.1-201ENST00000453589 447 ntBASIC19.11■□□□□ 0.65
MRE11P49959 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.11■□□□□ 0.65
MRE11P49959 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.11■□□□□ 0.65
MRE11P49959 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MRE11P49959 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.11■□□□□ 0.65
MRE11P49959 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.11■□□□□ 0.65
MRE11P49959 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.11■□□□□ 0.65
MRE11P49959 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.11■□□□□ 0.65
MRE11P49959 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.11■□□□□ 0.65
MRE11P49959 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.11■□□□□ 0.65
MRE11P49959 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MRE11P49959 AC024243.1-201ENST00000609234 778 ntBASIC19.11■□□□□ 0.65
MRE11P49959 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.11■□□□□ 0.65
MRE11P49959 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
MRE11P49959 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
MRE11P49959 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MRE11P49959 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
MRE11P49959 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC19.11■□□□□ 0.65
MRE11P49959 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
MRE11P49959 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MRE11P49959 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC19.1■□□□□ 0.65
MRE11P49959 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC19.1■□□□□ 0.65
MRE11P49959 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 AC097637.2-201ENST00000624096 1997 ntBASIC19.1■□□□□ 0.65
MRE11P49959 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.1■□□□□ 0.65
MRE11P49959 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
MRE11P49959 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC19.1■□□□□ 0.65
MRE11P49959 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
MRE11P49959 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
MRE11P49959 LBH-203ENST00000404397 543 ntTSL 4 BASIC19.1■□□□□ 0.65
MRE11P49959 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.1■□□□□ 0.65
MRE11P49959 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC19.1■□□□□ 0.65
MRE11P49959 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.1■□□□□ 0.65
MRE11P49959 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.1■□□□□ 0.65
MRE11P49959 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC19.1■□□□□ 0.65
MRE11P49959 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
MRE11P49959 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
MRE11P49959 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MRE11P49959 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.1■□□□□ 0.65
MRE11P49959 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MRE11P49959 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MRE11P49959 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MRE11P49959 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC19.09■□□□□ 0.65
MRE11P49959 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
MRE11P49959 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC19.09■□□□□ 0.65
MRE11P49959 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
MRE11P49959 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.09■□□□□ 0.65
MRE11P49959 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
MRE11P49959 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
MRE11P49959 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MRE11P49959 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
MRE11P49959 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.09■□□□□ 0.65
MRE11P49959 COX20P2-201ENST00000452636 358 ntBASIC19.09■□□□□ 0.65
MRE11P49959 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC19.09■□□□□ 0.65
MRE11P49959 DHDH-204ENST00000523250 634 ntTSL 5 BASIC19.09■□□□□ 0.65
MRE11P49959 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.09■□□□□ 0.65
MRE11P49959 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.09■□□□□ 0.65
MRE11P49959 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC19.09■□□□□ 0.65
MRE11P49959 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.09■□□□□ 0.65
MRE11P49959 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MRE11P49959 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MRE11P49959 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MRE11P49959 AC010460.3-201ENST00000511359 1579 ntBASIC19.09■□□□□ 0.65
MRE11P49959 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.09■□□□□ 0.65
MRE11P49959 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC19.09■□□□□ 0.65
MRE11P49959 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms