Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRCA1P38398 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.4■□□□□ 0.7
BRCA1P38398 CYP2AB1P-202ENST00000454440 1456 ntBASIC19.4■□□□□ 0.7
BRCA1P38398 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRCA1P38398 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.4■□□□□ 0.7
BRCA1P38398 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.4■□□□□ 0.7
BRCA1P38398 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRCA1P38398 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
BRCA1P38398 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
BRCA1P38398 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRCA1P38398 CYP46A4P-201ENST00000414953 267 ntBASIC19.4■□□□□ 0.7
BRCA1P38398 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC19.4■□□□□ 0.7
BRCA1P38398 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC19.4■□□□□ 0.7
BRCA1P38398 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC19.4■□□□□ 0.7
BRCA1P38398 AC005730.2-201ENST00000564549 1184 ntBASIC19.4■□□□□ 0.7
BRCA1P38398 AC079336.7-201ENST00000623428 1078 ntBASIC19.4■□□□□ 0.7
BRCA1P38398 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
BRCA1P38398 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRCA1P38398 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRCA1P38398 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRCA1P38398 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRCA1P38398 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
BRCA1P38398 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRCA1P38398 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.4■□□□□ 0.7
BRCA1P38398 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.4■□□□□ 0.7
BRCA1P38398 AC067852.2-201ENST00000590513 2313 ntBASIC19.39■□□□□ 0.7
BRCA1P38398 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
BRCA1P38398 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
BRCA1P38398 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
BRCA1P38398 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
BRCA1P38398 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
BRCA1P38398 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.7
BRCA1P38398 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
BRCA1P38398 TISP43-201ENST00000409793 538 ntTSL 4 BASIC19.39■□□□□ 0.7
BRCA1P38398 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC19.39■□□□□ 0.7
BRCA1P38398 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC19.39■□□□□ 0.7
BRCA1P38398 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC19.39■□□□□ 0.7
BRCA1P38398 AC104982.3-201ENST00000581995 514 ntBASIC19.39■□□□□ 0.7
BRCA1P38398 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRCA1P38398 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRCA1P38398 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.39■□□□□ 0.69
BRCA1P38398 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRCA1P38398 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC19.39■□□□□ 0.69
BRCA1P38398 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRCA1P38398 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
BRCA1P38398 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BRCA1P38398 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRCA1P38398 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRCA1P38398 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BRCA1P38398 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
BRCA1P38398 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
BRCA1P38398 UFM1-202ENST00000379649 846 ntTSL 4 BASIC19.39■□□□□ 0.69
BRCA1P38398 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BRCA1P38398 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC19.39■□□□□ 0.69
BRCA1P38398 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC19.39■□□□□ 0.69
BRCA1P38398 NKAIN1P1-201ENST00000435754 582 ntBASIC19.39■□□□□ 0.69
BRCA1P38398 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.39■□□□□ 0.69
BRCA1P38398 RN7SL720P-201ENST00000488178 304 ntBASIC19.39■□□□□ 0.69
BRCA1P38398 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC19.39■□□□□ 0.69
BRCA1P38398 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC19.39■□□□□ 0.69
BRCA1P38398 AP003171.2-201ENST00000528208 925 ntBASIC19.39■□□□□ 0.69
BRCA1P38398 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BRCA1P38398 CMC2-214ENST00000565925 640 ntTSL 5 BASIC19.39■□□□□ 0.69
BRCA1P38398 NKG7-204ENST00000595217 816 ntTSL 2 BASIC19.39■□□□□ 0.69
BRCA1P38398 AC015818.8-201ENST00000587907 1519 ntBASIC19.39■□□□□ 0.69
BRCA1P38398 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRCA1P38398 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.39■□□□□ 0.69
BRCA1P38398 AL023775.1-201ENST00000454907 1746 ntBASIC19.39■□□□□ 0.69
BRCA1P38398 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC19.39■□□□□ 0.69
BRCA1P38398 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC19.38■□□□□ 0.69
BRCA1P38398 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
BRCA1P38398 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
BRCA1P38398 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC19.38■□□□□ 0.69
BRCA1P38398 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.38■□□□□ 0.69
BRCA1P38398 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.38■□□□□ 0.69
BRCA1P38398 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BRCA1P38398 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BRCA1P38398 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BRCA1P38398 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
BRCA1P38398 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.38■□□□□ 0.69
BRCA1P38398 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BRCA1P38398 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
BRCA1P38398 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC19.38■□□□□ 0.69
BRCA1P38398 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.38■□□□□ 0.69
BRCA1P38398 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
BRCA1P38398 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
BRCA1P38398 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
BRCA1P38398 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BRCA1P38398 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC19.38■□□□□ 0.69
BRCA1P38398 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC19.38■□□□□ 0.69
BRCA1P38398 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BRCA1P38398 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BRCA1P38398 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC19.38■□□□□ 0.69
BRCA1P38398 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BRCA1P38398 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
BRCA1P38398 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC19.38■□□□□ 0.69
BRCA1P38398 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.38■□□□□ 0.69
BRCA1P38398 AL354989.2-201ENST00000435838 1540 ntBASIC19.38■□□□□ 0.69
BRCA1P38398 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BRCA1P38398 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms