Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A5P29400 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A5P29400 AC078819.1-201ENST00000547454 765 ntBASIC19.2■□□□□ 0.66
COL4A5P29400 AC012085.1-201ENST00000548270 765 ntBASIC19.2■□□□□ 0.66
COL4A5P29400 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A5P29400 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A5P29400 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC19.2■□□□□ 0.66
COL4A5P29400 GPX4-206ENST00000588919 803 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A5P29400 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A5P29400 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A5P29400 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A5P29400 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.2■□□□□ 0.66
COL4A5P29400 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A5P29400 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A5P29400 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
COL4A5P29400 AL121723.1-201ENST00000445194 1519 ntBASIC19.2■□□□□ 0.66
COL4A5P29400 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A5P29400 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A5P29400 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A5P29400 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A5P29400 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
COL4A5P29400 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A5P29400 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A5P29400 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL4A5P29400 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC19.2■□□□□ 0.66
COL4A5P29400 LARP4-220ENST00000615080 856 ntTSL 5 BASIC19.2■□□□□ 0.66
COL4A5P29400 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC19.2■□□□□ 0.66
COL4A5P29400 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A5P29400 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A5P29400 TP73-209ENST00000603362 1668 ntTSL 5 BASIC19.2■□□□□ 0.66
COL4A5P29400 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL4A5P29400 RNF216P1-203ENST00000404404 2427 ntBASIC19.19■□□□□ 0.66
COL4A5P29400 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC19.19■□□□□ 0.66
COL4A5P29400 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A5P29400 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.19■□□□□ 0.66
COL4A5P29400 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
COL4A5P29400 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A5P29400 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A5P29400 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A5P29400 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
COL4A5P29400 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A5P29400 BRF1-202ENST00000379932 884 ntTSL 5 BASIC19.19■□□□□ 0.66
COL4A5P29400 SLC25A24P2-201ENST00000415059 510 ntBASIC19.19■□□□□ 0.66
COL4A5P29400 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC19.19■□□□□ 0.66
COL4A5P29400 AL591846.1-201ENST00000451736 433 ntBASIC19.19■□□□□ 0.66
COL4A5P29400 NEU3-202ENST00000526068 431 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A5P29400 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC19.19■□□□□ 0.66
COL4A5P29400 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC19.19■□□□□ 0.66
COL4A5P29400 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC19.19■□□□□ 0.66
COL4A5P29400 AC106872.11-201ENST00000605838 421 ntBASIC19.19■□□□□ 0.66
COL4A5P29400 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC19.19■□□□□ 0.66
COL4A5P29400 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC19.19■□□□□ 0.66
COL4A5P29400 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.19■□□□□ 0.66
COL4A5P29400 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A5P29400 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A5P29400 AC007613.1-201ENST00000572811 2597 ntBASIC19.19■□□□□ 0.66
COL4A5P29400 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A5P29400 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A5P29400 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A5P29400 AC018735.1-201ENST00000437208 1502 ntBASIC19.19■□□□□ 0.66
COL4A5P29400 ZBTB45P2-201ENST00000452245 1531 ntBASIC19.19■□□□□ 0.66
COL4A5P29400 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A5P29400 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A5P29400 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.19■□□□□ 0.66
COL4A5P29400 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A5P29400 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A5P29400 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A5P29400 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A5P29400 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A5P29400 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
COL4A5P29400 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A5P29400 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A5P29400 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A5P29400 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.18■□□□□ 0.66
COL4A5P29400 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A5P29400 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
COL4A5P29400 FAM197Y7-201ENST00000432892 766 ntBASIC19.18■□□□□ 0.66
COL4A5P29400 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC19.18■□□□□ 0.66
COL4A5P29400 OARD1-212ENST00000482515 832 ntTSL 2 BASIC19.18■□□□□ 0.66
COL4A5P29400 AC026410.3-201ENST00000514280 936 ntBASIC19.18■□□□□ 0.66
COL4A5P29400 MIR4741-201ENST00000579822 90 ntBASIC19.18■□□□□ 0.66
COL4A5P29400 AC097359.3-201ENST00000603982 1210 ntBASIC19.18■□□□□ 0.66
COL4A5P29400 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A5P29400 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A5P29400 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC19.18■□□□□ 0.66
COL4A5P29400 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.18■□□□□ 0.66
COL4A5P29400 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A5P29400 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A5P29400 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A5P29400 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A5P29400 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A5P29400 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
COL4A5P29400 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
COL4A5P29400 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A5P29400 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A5P29400 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A5P29400 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A5P29400 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
COL4A5P29400 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
COL4A5P29400 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms