Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.47■□□□□ 0.23
PTPN4P29074 AC055717.3-201ENST00000622967 595 ntBASIC16.47■□□□□ 0.23
PTPN4P29074 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
PTPN4P29074 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
PTPN4P29074 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.47■□□□□ 0.23
PTPN4P29074 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.46■□□□□ 0.23
PTPN4P29074 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC16.46■□□□□ 0.23
PTPN4P29074 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.46■□□□□ 0.23
PTPN4P29074 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.46■□□□□ 0.23
PTPN4P29074 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
PTPN4P29074 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.46■□□□□ 0.23
PTPN4P29074 NCF1C-201ENST00000438382 1427 ntBASIC16.46■□□□□ 0.23
PTPN4P29074 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.46■□□□□ 0.23
PTPN4P29074 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
PTPN4P29074 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.46■□□□□ 0.23
PTPN4P29074 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
PTPN4P29074 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.46■□□□□ 0.23
PTPN4P29074 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.46■□□□□ 0.23
PTPN4P29074 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
PTPN4P29074 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
PTPN4P29074 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.46■□□□□ 0.23
PTPN4P29074 SIGLEC30P-201ENST00000455569 941 ntBASIC16.46■□□□□ 0.23
PTPN4P29074 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.46■□□□□ 0.23
PTPN4P29074 AC064836.3-201ENST00000607928 673 ntBASIC16.46■□□□□ 0.23
PTPN4P29074 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.46■□□□□ 0.23
PTPN4P29074 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.46■□□□□ 0.23
PTPN4P29074 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN4P29074 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.46■□□□□ 0.22
PTPN4P29074 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
PTPN4P29074 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
PTPN4P29074 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PTPN4P29074 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.45■□□□□ 0.22
PTPN4P29074 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PTPN4P29074 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.45■□□□□ 0.22
PTPN4P29074 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.45■□□□□ 0.22
PTPN4P29074 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 AC063926.3-201ENST00000624734 5658 ntBASIC16.45■□□□□ 0.22
PTPN4P29074 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.45■□□□□ 0.22
PTPN4P29074 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
PTPN4P29074 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.45■□□□□ 0.22
PTPN4P29074 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.45■□□□□ 0.22
PTPN4P29074 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.45■□□□□ 0.22
PTPN4P29074 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.45■□□□□ 0.22
PTPN4P29074 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.45■□□□□ 0.22
PTPN4P29074 AC112482.1-201ENST00000492080 688 ntBASIC16.45■□□□□ 0.22
PTPN4P29074 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.45■□□□□ 0.22
PTPN4P29074 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.45■□□□□ 0.22
PTPN4P29074 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.45■□□□□ 0.22
PTPN4P29074 AC019129.2-201ENST00000609837 1235 ntBASIC16.45■□□□□ 0.22
PTPN4P29074 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.45■□□□□ 0.22
PTPN4P29074 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
PTPN4P29074 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.45■□□□□ 0.22
PTPN4P29074 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PTPN4P29074 AC148477.5-201ENST00000625164 1645 ntBASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms