Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 INIP-202ENST00000374236 874 ntTSL 2 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 AC012640.2-201ENST00000561606 901 ntBASIC12.51□□□□□ -0.41
HLA-DMBP28068 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 NME4-212ENST00000621774 904 ntTSL 3 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 ANKRD26P3-201ENST00000454044 2748 ntBASIC12.5□□□□□ -0.41
HLA-DMBP28068 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 CALM1-205ENST00000553542 877 ntTSL 5 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 RIN3-211ENST00000557762 517 ntTSL 3 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 AC008667.4-201ENST00000607370 168 ntBASIC12.5□□□□□ -0.41
HLA-DMBP28068 AC010654.1-201ENST00000615722 808 ntBASIC12.5□□□□□ -0.41
HLA-DMBP28068 GGTLC5P-201ENST00000617623 998 ntBASIC12.5□□□□□ -0.41
HLA-DMBP28068 AC116407.3-201ENST00000623905 1129 ntBASIC12.5□□□□□ -0.41
HLA-DMBP28068 AP001350.2-201ENST00000625104 1094 ntBASIC12.5□□□□□ -0.41
HLA-DMBP28068 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC12.5□□□□□ -0.41
HLA-DMBP28068 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 LINC01144-201ENST00000626198 1710 ntBASIC12.5□□□□□ -0.41
HLA-DMBP28068 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 SLC9A3P2-201ENST00000447821 2021 ntBASIC12.5□□□□□ -0.41
HLA-DMBP28068 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DMBP28068 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
HLA-DMBP28068 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
HLA-DMBP28068 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HLA-DMBP28068 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms